Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1019 165 1e-38 seq276 165 1e-38 >seq1019 Length=27228 Score = 165 bits (182), Expect = 1e-38 Identities = 134/161 (83%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 78 CTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA 137 ||||| || |||| | ||||||||| |||||||||||| |||||| |||||| |||| Sbjct 21312 CTCACCTTTCCTACTGGTGGGTGAAGAATCCAACGCTTTGCGAATTGTGCTTCTCAATGA 21371 Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 | ||||||||| ||| ||||| |||||||||| ||||| || ||||||||| | |||||| Sbjct 21372 TTGGAAGAGCCAACAACGAAGAATCAAAAAGCTACGTCACT-TGAACGCTTCGTTGCCAC 21430 Query 198 AAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 || ||| |||||||| |||||| ||| ||| ||||||| || Sbjct 21431 AATCCAATTATCCCTCTGGTAATTTTACTGACACCTCTTGC 21471 >seq276 Length=283276 Score = 165 bits (182), Expect = 1e-38 Identities = 121/138 (88%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | ||| |||| ||||||||||||||||||||||||| Sbjct 4891 TACTAAGCAGGATTACTATCGCAACAACGAGTCA-CAGTAGGGTAAAACTAACCTGTCTC 4833 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 4832 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGCG 4773 Query 120 AATTCTGCTTCGGTATGA 137 ||||||||| || |||| Sbjct 4772 AATTCTGCTCCGCAATGA 4755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854289030528