Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ascaris_20suum_20[genbank_20GCA_5F000298755.1_202012-09-20] 12,988 sequences; 269,559,681 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq46 179 1e-42 seq20 165 3e-38 seq241 100 9e-19 >seq46 Length=806011 Score = 179 bits (198), Expect = 1e-42 Identities = 105/109 (96%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 1393 CAGGGTCTTCTTTCCCCGCTGTGTTCGCCAAGCCCGTTCCCTTGGCTGTGGTTTTGCTAG 1334 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 405 ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1333 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCA 1285 >seq20 Length=1278773 Score = 165 bits (182), Expect = 3e-38 Identities = 187/245 (76%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 166 AGACCAGTTC-CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACT- 223 || ||||||| || | | || |||||||| || |||| | || | ||||||||||| Sbjct 1193807 AGCCCAGTTCTCGTCTTACCGAATAAGTAAAGAATCGATGAAAGTGGAGGTATTTCACTG 1193748 Query 224 TGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 | ||||| || ||||| ||||| ||| ||||||| | | |||||| | | |||||| Sbjct 1193747 TTGGCCGA--CGCCTCCCTCTTATGCTATTCCTCTCATGACTCTTCACAGAATTGGACTA 1193690 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTG-ATTCCGCCAAGCCCGTTCCCTTGGC 342 |||||||||| || || |||||||||| || ||| ||| || ||| | || |||||| Sbjct 1193689 GAGTCAAGCTTAAAAGTGTCTTCTTTCTCCACTGTCTTCGGCAAAG--CTTTTCCTTGGG 1193632 Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402 ||| | || |||||| |||||||||| |||| || ||||||| ||||||||||| || Sbjct 1193631 TGTTGCTTTGCTAGAAGGTAGATAGGGGCAGTAGGGATCTCGTCAATCCATTCATACGGA 1193572 Query 403 TCACT 407 ||||| Sbjct 1193571 TCACT 1193567 >seq241 Length=320158 Score = 100 bits (110), Expect = 9e-19 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||||||||||| ||| |||| || ||| |||| ||||||||||||||||||| | Sbjct 69143 CTTTTGCTCTACAAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACG 69202 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| ||| |||| ||||||||| ||||||||| ||| | | |||| || Sbjct 69203 ATTTGACAAATGTACCGCCCCAGTGAAACTCCCCGCCTAAAACTGTCGTC 69252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634987620224