Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq656 192 9e-47 seq2059 181 2e-43 seq659 179 6e-43 seq653 179 6e-43 seq11 84.2 3e-14 seq2073 78.8 1e-12 >seq656 Length=2908 Score = 192 bits (212), Expect = 9e-47 Identities = 184/228 (81%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 2413 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 2470 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 2471 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAAGGGGTT 2530 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| |||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 2531 ACCAATACCTTTCGGTAATGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 2589 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 2590 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 2635 >seq2059 Length=1548761 Score = 181 bits (200), Expect = 2e-43 Identities = 178/223 (80%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| ||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 115920 GTACAAAGGGAAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 115863 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 115862 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAAGGGGTT 115803 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| |||| | ||| | || | || ||| | | ||||||||||| ||||| Sbjct 115802 ACCAATACCTTTCGGTAATGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCACGTGCA 115744 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 115743 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 115702 >seq659 Length=2254 Score = 179 bits (198), Expect = 6e-43 Identities = 182/228 (80%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 495 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 438 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 437 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAAGGGGTT 378 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | || ||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 377 ACCAATATCTTTCGATAATGGTTACAG-CACGCTGA-TCCTCCAGTGTAGCGCGCGTGCA 320 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 319 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 274 >seq653 Length=2347 Score = 179 bits (198), Expect = 6e-43 Identities = 182/228 (80%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 495 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 438 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 437 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAAGGGGTT 378 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | || ||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 377 ACCAATATCTTTCGATAATGGT-ACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 320 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 |||| | |||||||||||||||||||||||||||||| ||| |||||| Sbjct 319 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC-AACTTC 274 >seq11 Length=1798 Score = 84.2 bits (92), Expect = 3e-14 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| ||| Sbjct 1709 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 1766 Query 61 CTCGTTGAAGACCAACAATTGCAAT 85 |||||| | | || ||||||||| Sbjct 1767 CTCGTTCATGGGGAATAATTGCAAT 1791 >seq2073 Length=994159 Score = 78.8 bits (86), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 3/107 (3%) Strand=Plus/Plus Query 109 TTTCAAAGA-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGT 167 |||||| | ||||| |||| |||| | ||| | || | || ||| | | |||||| Sbjct 433182 TTTCAAGGGGTTACCAATACCTTTCGGTAATGGTTACAG-CACGCTGATTCCTCCAGTGT 433240 Query 168 AGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTAT 214 ||||||||||| |||| | |||||||||||||| ||||||||||||| Sbjct 433241 AGCGCGCGTGCAGCCCTGGACATCTAAGGGCAT-ACAGACCTGTTAT 433286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751928381165