Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2591 235 2e-59 seq1530 178 4e-42 seq2221 161 3e-37 seq1982 159 1e-36 seq2077 152 2e-34 seq1991 152 2e-34 seq1998 118 3e-24 seq1938 109 2e-21 seq2073 107 6e-21 >seq2591 Length=10997 Score = 235 bits (260), Expect = 2e-59 Identities = 145/155 (94%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 ||||||||| |||||||||||| | | |||||| ||||||||||||||||||||||||| Sbjct 3058 CCCACTTATGCTACACCTCTCATGACTCTTCACAGAGTCGGACTAGAGTCAAGCTCAACA 3117 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 3118 GGGTCTTCTTTCCCCGCTGTGTTTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 3177 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCAT 393 ||||||||||||||||||||||||||||||||||| Sbjct 3178 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCAT 3212 >seq1530 Length=858569 Score = 178 bits (196), Expect = 4e-42 Identities = 152/184 (83%), Gaps = 18/184 (10%) Strand=Plus/Plus Query 298 AGGGT--CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||| ||||||||||| ||| || ||||||| ||||||| | ||| || Sbjct 475111 AGGGTGACTTCTTTCCCCTCTGTTT--GCCAAGCGCGTTCCCCT----------TCGTTA 475158 Query 356 GATAGTAGATAGGGA-CAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 | |||||| || ||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 475159 GGTAGTAGGTATGGAACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACGAATTAGA 475218 Query 415 TGACGAGGCA-TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||| ||||| || |||||||||| ||||||||||||||||||| |||||| ||| ||| Sbjct 475219 TGACAAGGCACTTGGGCTACCTTA--AGAGTCATAGTTACTCCCGTCGTTTATCCGTGCT 475276 Query 474 TGGT 477 |||| Sbjct 475277 TGGT 475280 >seq2221 Length=5235760 Score = 161 bits (178), Expect = 3e-37 Identities = 108/118 (92%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| || Sbjct 3224205 TGGCTGTGGTTTCGCTAGATAATAGATAGGGACAGTGGAAATCTCGTTAATCCATTCCTG 3224264 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACC-TTAAG-AGAGTCATAGTTACT 454 | |||||| ||||| ||||||||||||||||||||| ||||| |||||| | |||||| Sbjct 3224265 CACGTCACGAATTAAATGACGAGGCATTTGGCTACCTTTAAGAAGAGTCGTGGTTACT 3224322 >seq1982 Length=360613 Score = 159 bits (176), Expect = 1e-36 Identities = 145/182 (80%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 ||||||||| |||||||| ||||| ||| | |||||||||||| ||||| |||| || Sbjct 318457 AGCTCAACAAGGTCTTCTCTCCCCACTGTATTTGCCAAGCCCGTTTTCTTGGGTGTGCTT 318398 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 | || | || || ||| || ||||||||||||| ||||| |||||| || ||| || Sbjct 318397 TTGCCAAGTATTAAGTAGAAACCGTGGGAATCTCGTCAATCCCTTCATGTGCATCATGAA 318338 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 ||| | || |||||||||||||||| || || || |||||||||||| |||||||||| Sbjct 318337 TTAAACGAGGAGGCATTTGGCTACCCTA--AGCGTTATAGTTACTCCCATCGTTTACCCG 318280 Query 470 CG 471 || Sbjct 318279 CG 318278 >seq2077 Length=2457047 Score = 152 bits (168), Expect = 2e-34 Identities = 168/218 (77%), Gaps = 7/218 (3%) Strand=Plus/Minus Query 289 AAGCT-CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 ||||| ||||||| | |||||||| ||||| | |||||| ||||||||| ||| || Sbjct 1314892 AAGCTTCAACAGGATTTTCTTTCCTCGCTGTATTTGCCAAGTTCGTTCCCTTAGCTATGA 1314833 Query 348 TTTCGCTAGATAGTAGA-TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 ||||||||||||||||| | ||||| |||| ||||| | || ||||| || ||| Sbjct 1314832 TTTCGCTAGATAGTAGATTGGGGACTGTGGAAATCTTATCAA-ACATTCGTG---TTCAT 1314777 Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 |||||||||| |||||||||| ||||||||||| |||| ||||||| | | ||||| Sbjct 1314776 GAATTAGATGATAAGGCATTTGGTTACCTTAAGAGTGTCAAAGTTACTTTCTCTGTTTA- 1314718 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG 504 || | | ||||||| | ||| ||| ||||| |||| Sbjct 1314717 CCTCTGTCCGTTGAATCCCATCATTTTTACATTTAGAG 1314680 >seq1991 Length=1961302 Score = 152 bits (168), Expect = 2e-34 Identities = 115/133 (86%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 || |||||||||||| || |||||||| | | | || || ||||||||| ||||||| | Sbjct 1272088 TAAAGTCAAGCTCAAAAGAGTCTTCTTCCTCAGTTGTTT--GCCAAGCCC-TTCCCTTAG 1272032 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| || Sbjct 1272031 CTGTGGTTTCGTTAGATAGTAGATAGGGATAGTGGAAATCTCGTTAATCCATTCATGTGC 1271972 Query 402 GTCACTAATTAGA 414 ||||| || |||| Sbjct 1271971 GTCACGAAATAGA 1271959 >seq1998 Length=2433660 Score = 118 bits (130), Expect = 3e-24 Identities = 85/99 (86%), Gaps = 8/99 (8%) Strand=Plus/Plus Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||||||||||| | ||||||||| | |||||||||||||| Sbjct 1089217 ACAGGGTCTTCTTTCCCCGCTGTGTTTGCCAAGCCCTT--------CTGTGGTTTCGCTA 1089268 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 |||||||||||||||||||||||||||| |||||||||| Sbjct 1089269 GATAGTAGATAGGGACAGTGGGAATCTCATTAATCCATT 1089307 Score = 96.9 bits (106), Expect = 1e-17 Identities = 161/228 (71%), Gaps = 21/228 (9%) Strand=Plus/Minus Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||| | | ||||||| |||||| | | ||| ||||| ||| | ||| || | Sbjct 339469 TCAACAAGATTTTCTTTCTCCGCTGTGTTTGGCAAA---GTTCCTTTGACCGTGTTT--G 339415 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||||||||| | ||||||||||||| ||||||||||||| ||| || |||| ||||| Sbjct 339414 CTAGATAGTAGAGAAGGACAGTGGGAATTTCGTTAATCCATTTATG-GCATCACGAATTA 339356 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 | || || | | | ||||| ||| | || | ||| | |||| Sbjct 339355 AGTAACAAGCGAACT-GTTACCTGAAG-CATTC-CATTTATTACCGC------------T 339311 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 || |||| |||||||| ||| |||| |||||| |||||| |||||| Sbjct 339310 TTCATTGATTTTCTTCATTTTTGCATTTAGAGCATTGGGCAAAAATCA 339263 >seq1938 Length=36717 Score = 109 bits (120), Expect = 2e-21 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| |||| || ||| |||| ||||||||||||||||||| | Sbjct 35118 CTTTTACTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACG 35177 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| |||||||| ||||||||| |||||||||| ||||||| |||| || Sbjct 35178 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTC 35227 >seq2073 Length=994159 Score = 107 bits (118), Expect = 6e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||||| |||||| || |||||||||||| |||||| |||||||||||| |||||| Sbjct 43135 GCCAAGCCTGTTCCCGTGATTGTGGTTTCGCTTCATAGTAAATAGGGACAGTGAGAATCT 43076 Query 383 CGTTAATCCATTCATGCGC 401 ||||||||||||||||||| Sbjct 43075 CGTTAATCCATTCATGCGC 43057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635039243488