Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_033701.1 Length=11743 Score E Sequences producing significant alignments: (Bits) Value seq1944 156 3e-34 seq2040 145 6e-31 seq1229 143 2e-30 >seq1944 Length=49404 Score = 156 bits (172), Expect = 3e-34 Identities = 301/437 (69%), Gaps = 14/437 (3%) Strand=Plus/Minus Query 727 CTGCCATTGACATGTTTCTGCGGAAGTTCCCCAATCATCAATACGAAAAGTTACGTGCGT 786 |||| | |||||||| | | || |||||||||||| ||| ||||| | || || | Sbjct 21157 CTGCTGTGGACATGTTCTTTAGAAAATTCCCCAATCATAAATTTGAAAAATATCGAGCAT 21098 Query 787 GTACTCTCGGGACTTTTTTGAAGGATTGTGTCGTGATGTCGTCCGTCAACCAGGCTG-CC 845 | || || || || || | || ||||| || || || | || | || || || | || Sbjct 21097 GCACACTGGGTACATTCCTCAAAGATTGCGTGGTCATCACTTCTCTTAATCAAGCAGCCC 21038 Query 846 GATG---CTTTAT-TAACTAGTCCTCCCATTCTTCTTCAATACGTCTTCAGCCGTGACAT 901 ||| || ||| ||| || | | | |||||||| || || ||| ||||| Sbjct 21037 AATGTCTCTCTATAGAACCAG-----CTGTATTACTTCAATATGTATTTAGCAAAGACAT 20983 Query 902 TGCAACTGATGTCAGACATATAATTGGGGGTGAACCCACAGAGGAGAAAACAAC--TGAT 959 |||| ||||||| ||| ||||||| || | ||||| | |||||| ||| ||| Sbjct 20982 TGCAGATGATGTCCGACGACTAATTGGAGGAG-GTCCACA-TGAAGAAAAGAACGTTGAC 20925 Query 960 CATTCTTATTTCCAATATATGAGAGAGATGAATTTGGTTCCTCGTTCCGCATATTCTGCA 1019 ||||| |||||||| |||||||||||||||||| || | || | ||| | || || ||| Sbjct 20924 CATTCATATTTCCAGTATATGAGAGAGATGAATCTGATACCGAGATCCCCCTACTCAGCA 20865 Query 1020 AGTTTAAATCCTAATTTGTTCTTATGGTGCCAATTTATTGGGGTACTGCTCGGGAAACGA 1079 | | |||||||| ||||| ||||| || || || || || ||| | || ||| || Sbjct 20864 TCTATCAATCCTAACCTGTTCACCTGGTGTCAGTTCATCGGAGTTCTGATGGGCAAAAGA 20805 Query 1080 CGTTCAATGTATGCTCGGCTCTTGGAATGCTCCAGCCCTACAATGATCCTAGTTCATGCC 1139 ||||| | ||||| | | |||| || | ||| || ||||| | || || ||||| Sbjct 20804 CGTTCGGTCCATGCTAGATTACTGGACTGTTTCAGTCCGTCAATGCTTCTTGTGTATGCC 20745 Query 1140 TGCTATGTCGTTTATTA 1156 | ||||| || ||||| Sbjct 20744 TCTTATGTTGTGTATTA 20728 >seq2040 Length=64115 Score = 145 bits (160), Expect = 6e-31 Identities = 360/534 (67%), Gaps = 22/534 (4%) Strand=Plus/Minus Query 634 TTTTTACCATGGAACCATTCAATCTTAAGAATGTAAT--TGGTGTTACCAACCTGGCACA 691 |||| | ||||||||||| ||||| || | || | || || | ||| | |||| Sbjct 11806 TTTTCAAAATGGAACCATTTAATCT--GGATTCTACTGCAGGAGTGATGAACGTACCACA 11749 Query 692 TTGGCTTCAGGATACCTCTTT--TACGTCCATTGTAGCTGCCATTGACATGTTTCTGCGG 749 |||| |||| ||| | | || | || | | ||| | || ||||| |||||| | | Sbjct 11748 TTGGATTCAAGAT-CATGATTACTGTGTTC-TGGTATCGGCTATTGATATGTTTTTCAGA 11691 Query 750 AAGTTCCCCAATCATCAATACGAAAAGTTACGTGCGTGTACTCTCGGGACTTTTTTGAAG 809 || ||||| || || ||| |||||| | || || ||||| | || || || || || Sbjct 11690 AAATTCCCAAACCACAAATTCGAAAAATATCGAGCATGTACGTTAGGTACATTCTTAAAA 11631 Query 810 GATTGTGTCGTGATGTCGTCCGTCAACCAGGCTGC-CGATG-CTTT--ATT-AACTAGTC 864 |||||||| || || | ||| | |||||||| || | || |||| ||| ||| || Sbjct 11630 GATTGTGTAGTCATAACATCCCTGAACCAGGCAGCACAGTGTCTTTCCATTGAACCAGGT 11571 Query 865 CTCCCATTCTTCTTCAATACGTCTTCAGCCGTGACATTGCAACTGATGTCAGACATATAA 924 || | || ||||| || |||||| || || || ||||||||||| | | Sbjct 11570 GTC-----TTGCTCCAATATGTATTCAGCAAAGATATCGCTGATGATGTCAGACGGCTTA 11516 Query 925 TTGGGGGTGAACCCACAGAGGAGAAAACAACTGATCATTCTTATTTCCAATATATGAGAG 984 | || || | || || ||||| | |||||| || || |||||||||||||| | Sbjct 11515 TCGGAGGGGGGCCGCATGAAGAGAAGAATGTTGATCACTCATACTTCCAATATATGAGGG 11456 Query 985 AGATGAATTTGGTTCCTCGTTCCGCATATTCTGCAAGTTTAAATCCTAA--TTTGTTCTT 1042 | |||||| | | ||||| || ||||||| ||| | ||||| || ||| | || Sbjct 11455 AAATGAATCTAATACCTCGATCTCCATATTCGGCATCGATCAATCCCAACCTTTTTACT- 11397 Query 1043 ATGGTGCCAATTTATTGGGGTACTGCTCGGGAAACGACGTTCAATGTATGCTCGGCTCTT 1102 ||||| ||||| |||||||| || | || || |||| ||| | || || | | || Sbjct 11396 -TGGTGTCAATTCATTGGGGTTCTAATGGGAAAGAGACGATCAGTCTACGCAAGATTATT 11338 Query 1103 GGAATGCTCCAGCCCTACAATGATCCTAGTTCATGCCTGCTATGTCGTTTATTA 1156 || || | |||||| | ||| | || ||| |||| | || ||||||||||| Sbjct 11337 AGACTGTTTCAGCCCATCCATGCTTCTCGTTTATGCTTCATACGTCGTTTATTA 11284 >seq1229 Length=3395 Score = 143 bits (158), Expect = 2e-30 Identities = 360/534 (67%), Gaps = 21/534 (4%) Strand=Plus/Minus Query 634 TTTTTACCATGGAACCATTCAATCTTAAGAATGTAAT--TGGTGTTACCAACCTGGCACA 691 |||| | ||||||||||| ||||| | | | || | || || | ||| | |||| Sbjct 869 TTTTCAAAATGGAACCATTTAATCTGGA-ATTCTACTGCAGGAGTGATGAACGTACCACA 811 Query 692 TTGGCTTCAGGATACCTCTTT--TACGTCCATTGTAGCTGCCATTGACATGTTTCTGCGG 749 |||| |||| ||| | | || | || | | ||| | || ||||| |||||| | | Sbjct 810 TTGGATTCAAGAT-CATGATTACTGTGTTC-TGGTATCGGCTATTGATATGTTTTTCAGA 753 Query 750 AAGTTCCCCAATCATCAATACGAAAAGTTACGTGCGTGTACTCTCGGGACTTTTTTGAAG 809 || ||||| || || ||| |||||| | || || ||||| | || || || || || Sbjct 752 AAATTCCCAAACCACAAATTCGAAAAATATCGAGCATGTACGTTAGGTACATTCTTAAAA 693 Query 810 GATTGTGTCGTGATGTCGTCCGTCAACCAGGCTGC-CGATG-CTTT--ATT-AACTAGTC 864 |||||||| || || | ||| | |||||||| || | || |||| ||| ||| || Sbjct 692 GATTGTGTAGTCATAACATCCCTGAACCAGGCAGCACAGTGTCTTTCCATTGAACCAGGT 633 Query 865 CTCCCATTCTTCTTCAATACGTCTTCAGCCGTGACATTGCAACTGATGTCAGACATATAA 924 || | || ||||| || |||||| || || || ||||||||||| | | Sbjct 632 GTC-----TTGCTCCAATATGTATTCAGCAAAGATATCGCTGATGATGTCAGACGGCTTA 578 Query 925 TTGGGGGTGAACCCACAGAGGAGAAAACAACTGATCATTCTTATTTCCAATATATGAGAG 984 | || || | || || ||||| | |||||| || || |||||||||||||| | Sbjct 577 TCGGAGGGGGGCCGCATGAAGAGAAGAATGTTGATCACTCATACTTCCAATATATGAGGG 518 Query 985 AGATGAATTTGGTTCCTCGTTCCGCATATTCTGCAAGTTTAAATCCTAA--TTTGTTCTT 1042 | |||||| | | ||||| || ||||||| ||| | ||||| || ||| | || Sbjct 517 AAATGAATCTAATACCTCGATCTCCATATTCGGCATCGATCAATCCCAACCTTTTTACT- 459 Query 1043 ATGGTGCCAATTTATTGGGGTACTGCTCGGGAAACGACGTTCAATGTATGCTCGGCTCTT 1102 ||||| ||||| |||||||| || | || || |||| ||| | || || | | || Sbjct 458 -TGGTGTCAATTCATTGGGGTTCTAATGGGAAAGAGACGATCAGTCTACGCAAGATTATT 400 Query 1103 GGAATGCTCCAGCCCTACAATGATCCTAGTTCATGCCTGCTATGTCGTTTATTA 1156 || || | |||||| | ||| | || ||| |||| | || ||||||||||| Sbjct 399 AGACTGTTTCAGCCCATCCATGCTTCTCGTTTATGCTTCATACGTCGTTTATTA 346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37458256705388