Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq4854 190 3e-46 seq1356 152 8e-35 seq1531 86.0 9e-15 >seq4854 Length=906333 Score = 190 bits (210), Expect = 3e-46 Identities = 180/223 (81%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||| ||||| |||||||| | ||||||||||||| | Sbjct 141839 GTACAAAGGGCAGGGACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-C 141782 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| ||| || ||||||||| | ||||| |||||| | | |||||| | || Sbjct 141781 CTCGTTCAAGGGAAATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAAGGGGTT 141722 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| |||| |||| | ||| | || | || ||| | | ||||||||||||||||| Sbjct 141721 ACCAATACCTTTCGGTAATGGTTACAG-CACGCTGATTCCTCCAGTGTAGCGCGCGTGCA 141663 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| | |||||||||||||||||||||||||||||| ||||| Sbjct 141662 GCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAA 141621 >seq1356 Length=33441 Score = 152 bits (168), Expect = 8e-35 Identities = 167/214 (78%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 15 GACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCA 74 |||||| |||||| ||||| |||||||| | ||||||||||||| ||||||| ||| | Sbjct 3826 GACGTAATCAACGTGAGCT-GATGACTCACACTTACTAGGAATT-CCTCGTTCAAGGGAA 3883 Query 75 ACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTCG 133 | ||||||||| | ||||| |||||| | | |||||| | ||||| |||| ||| Sbjct 3884 ATAATTGCAATTCCCGATCCCGATCACGGAGGATTTTCAAGGGGTTACCAATACCTTTCG 3943 Query 134 GCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTA 193 | | ||| | | | | || | | ||||||||||||||||| |||| | ||||||| Sbjct 3944 GTAATGGTTACTGTTTAGG-GATTCCTCCAGTGTAGCGCGCGTGCAGCCCTGGACATCTA 4002 Query 194 AGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 ||||||||||||||||||||||| ||| |||||| Sbjct 4003 AGGGCATCACAGACCTGTTATTG-CTC-AACTTC 4034 >seq1531 Length=19969 Score = 86.0 bits (94), Expect = 9e-15 Identities = 60/66 (91%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||| ||| Sbjct 4879 CAGTGTAGCGCGCGTGCAGCCCTGGTCATCTAAGGGCATCACAGACCTGTTATTG-CTC- 4936 Query 222 AACTTC 227 |||||| Sbjct 4937 AACTTC 4942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751884642025