Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1 154 6e-35 seq1012 104 1e-19 seq1001 95.1 5e-17 >seq1 Length=27028 Score = 154 bits (170), Expect = 6e-35 Identities = 112/130 (86%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || || ||||||||||||||||||||||||| ||||| ||| |||||||||| Sbjct 26322 AGAGCGTATATGCTGGGACCCGAAAGATGGTGAACTATACCTGAGCAGGATGAAGCCAGA 26263 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||||||| ||| || |||| ||||| ||||||||||||||||| | || ||| Sbjct 26262 GGAAACTCTGGTGAAGGTCCGAAGCGATTCTGACGTGCAAATCGATCGTCTGACTTTGGT 26203 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 26202 ATAGGGGCGA 26193 >seq1012 Length=184763 Score = 104 bits (114), Expect = 1e-19 Identities = 94/117 (80%), Gaps = 5/117 (4%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 |||||| |||||| |||||||| ||| | |||| ||||||||||||||||||||||| Sbjct 37616 TGGGACTCGAAAG----TGAACTATACCTAAGTAGGATGAAGCCAGAGGAAACTCTGGTG 37671 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | || |||| ||||| |||| |||||||||||| | || | ||| |||||| Sbjct 37672 AAGTC-CGAAGCGATTCTGACGTGTAAATCGATCGTCTGACTTTGATATTTGGGCGA 37727 Score = 91.5 bits (100), Expect = 6e-16 Identities = 109/144 (76%), Gaps = 3/144 (2%) Strand=Plus/Plus Query 43 TCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATT 102 ||| ||||||| || |||||||| || || ||||| || ||||| |||||||| Sbjct 36928 TCGGGTTGTTTAAGACTGCAGCTCAAAGAGGATAGTAAACCTCATCTAAGGCTAAATAC- 36986 Query 103 GGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAG 161 | ||| |||||||||||| ||||||| |||| ||||| || |||| |||||| | || Sbjct 36987 GACCATGAGACCGATAGCAAACAAGTACCGTGAGGGAAAGTTGCAAAGAACTTTGAAGAG 37046 Query 162 AGAGTTAAAAAGCACGTGAAATTG 185 |||| | || || ||||||| || Sbjct 37047 AGAG-TCAAGAGGGCGTGAAAATG 37069 >seq1001 Length=7534 Score = 95.1 bits (104), Expect = 5e-17 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 572 CCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGC 631 || ||||||||||||||||| | ||| ||| |||||| ||| ||||||||| || | | Sbjct 6890 CCAGAAAGATGGTGAACTATACTTGAGCAGGATGAAGCTAGAAGAAACTCTGTTGAATGA 6831 Query 632 TCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||| ||||| |||| |||||||| ||| | | ||||| ||||||| Sbjct 6830 CCGAAGCGATTCTGACGTGGAAATCGATTGTCTGACTCTGGTATTGGGGCGA 6779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079660339250