Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1356 223 6e-56 seq1531 156 7e-36 seq4854 89.7 8e-16 seq7848 87.8 3e-15 >seq1356 Length=33441 Score = 223 bits (246), Expect = 6e-56 Identities = 200/245 (82%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| ||| Sbjct 3971 CAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTGC-TCA 4029 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC--ACCA-ACCATAGT 133 | |||| |||| | || | |||||||||||||| | || | | || | Sbjct 4030 A-CTTCATGCGGCTAAACACCGCTTGTCCCTCTAAGAAGTTGTCTGGACGATAAAATTAT 4088 Query 134 CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 | | | |||||||| ||| || |||||| ||||||||||||| |||||||||||||| Sbjct 4089 CCA-GTAACTATTTAGTAGGCTAGAGTCTCGCTCGTTATCGGAATAAACCAGACAAATCA 4147 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 |||||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||| Sbjct 4148 CTCCACCAACTAAGAACGGCCATGCACCACCAACCACCGAATCATGAAAGAGCTCTCAAT 4207 Query 254 CTGTC 258 ||||| Sbjct 4208 CTGTC 4212 >seq1531 Length=19969 Score = 156 bits (172), Expect = 7e-36 Identities = 183/241 (76%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 4879 CAGTGTAGCGCGCGTGCAGCCCTGGTCATCTAAGGGCATCACAGACCTGTTATTGC-TCA 4937 Query 77 AACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC-ACCAACCATAGT-C 134 | |||| ||| | || | |||||||||||||| | | | | | | | | Sbjct 4938 A-CTTCATGCTGCTAAACTCCGCTTGTCCCTCTAAGAAGTTGTCTGAACGATAAAATTAC 4996 Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 | |||||||| || | || || ||||||||||||| ||||||||||||||| Sbjct 4997 CCAGTAACTATTTAGTAGCTAGAGTCTTC--TCGTTATCGGAATAAACCAGACAAATCAC 5054 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||| |||| | ||||||||||||| ||| ||||| ||||||||| ||| || Sbjct 5055 TCCACCAACCTAGAATGACCATGCACCACCAACCACCAAATCATGAAAGAGCTCTCATTC 5114 Query 255 T 255 | Sbjct 5115 T 5115 >seq4854 Length=906333 Score = 89.7 bits (98), Expect = 8e-16 Identities = 57/61 (93%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 ||||||||||||||||| |||| | |||||||||||||||||||||||||||||| |||| Sbjct 141680 CAGTGTAGCGCGCGTGCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCA 141622 Query 77 A 77 | Sbjct 141621 A 141621 >seq7848 Length=345 Score = 87.8 bits (96), Expect = 3e-15 Identities = 93/121 (77%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||| ||| || | || ||| ||| || | |||||||||||||||||||| Sbjct 119 CTATTTAGTAGGCTA---TTTC--TCGCTATTAGATTAAACCAGACAAATCACTCCACTG 173 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTC 261 |||||||| |||||||||| |||| || ||||| || ||||| ||||||| || || Sbjct 174 ACTAAGAATGGCCATGCACTACCAAACACCAAATCATTAAGGAGCTCTCAATCTATCATC 233 Query 262 C 262 | Sbjct 234 C 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796677769635