Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq373 181 3e-43 seq396 170 6e-40 seq636 163 9e-38 seq756 152 2e-34 seq1687 143 9e-32 seq13563 132 2e-28 seq473 132 2e-28 seq189 109 2e-21 seq1 102 3e-19 seq171 96.9 1e-17 seq1603 80.6 9e-13 >seq373 Length=169799 Score = 181 bits (200), Expect = 3e-43 Identities = 153/184 (83%), Gaps = 18/184 (10%) Strand=Plus/Minus Query 298 AGGGT--CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||| ||||||||||||||| || ||||||| ||||||| | ||| || Sbjct 6047 AGGGTGACTTCTTTCCCCGCTGTTT--GCCAAGCGCGTTCCCCT----------TCGTTA 6000 Query 356 GATAGTAGATA-GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 | |||||| || |||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 5999 GGTAGTAGGTATGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACGAATTAAA 5940 Query 415 TGACGAGGCA-TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||| ||||| || |||||||||| ||||||||||||||||||| |||||| ||| ||| Sbjct 5939 TGACAAGGCACTTGGGCTACCTTA--AGAGTCATAGTTACTCCCGTCGTTTATCCGTGCT 5882 Query 474 TGGT 477 |||| Sbjct 5881 TGGT 5878 >seq396 Length=228062 Score = 170 bits (188), Expect = 6e-40 Identities = 119/133 (89%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 || |||||||||||||||||||||||||| | | || || ||||||||| ||||||| | Sbjct 23688 TAAAGTCAAGCTCAACAGGGTCTTCTTTCTCAGTTGTTT--GCCAAGCCC-TTCCCTTAG 23632 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| || Sbjct 23631 CTGTGGTTTCGTTAGATAGTAGATAGGGATAGTGGAAATCTCGTTAATCCATTCATGTGC 23572 Query 402 GTCACTAATTAGA 414 ||||| ||||||| Sbjct 23571 GTCACGAATTAGA 23559 >seq636 Length=168298 Score = 163 bits (180), Expect = 9e-38 Identities = 108/119 (91%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| | Sbjct 4001 TTGGCTGTGGTTTCGCTAGATAATAGATAGGGACAGTGGAAATCTCGTTAATCCATTCCT 4060 Query 398 GCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTT--AAGAGAGTCATAGTTACT 454 || |||||| ||||| ||||||||||||||||||||||| | || |||||| |||||| Sbjct 4061 GCACGTCACGAATTAAATGACGAGGCATTTGGCTACCTTTAAGGAAAGTCATGGTTACT 4119 >seq756 Length=132866 Score = 152 bits (168), Expect = 2e-34 Identities = 166/216 (77%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 289 AAGCT-CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 ||||| ||||||| | |||||||| | ||| | |||||| |||||||| |||||| Sbjct 116719 AAGCTTCAACAGGATTTTCTTTCCTCACTGCATTTGCCAAGTTGGTTCCCTTAGCTGTGA 116778 Query 348 TTTCGCTAGATAGTAGATAGGG-ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 |||||||||||||||||| ||| ||||||| ||||| | || | |||| || ||| Sbjct 116779 TTTCGCTAGATAGTAGATTGGGGACAGTGGAAATCTTATCAAAC-ATTCGTGT---TCAT 116834 Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 |||||||||| |||||||||| ||||||||||| |||| ||||||| ||| |||||| Sbjct 116835 GAATTAGATGATAAGGCATTTGGTTACCTTAAGAGTGTCAAAGTTACTTTCGCTGTTTAC 116894 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAG 502 | | |||||||| | ||| ||| |||| || Sbjct 116895 CTCTGTCCGGTTGAATCCCATCATTTTTTCATTTAG 116930 >seq1687 Length=889248 Score = 143 bits (158), Expect = 9e-32 Identities = 92/99 (93%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||| Sbjct 670808 ACAGGGTCTTCTTTCCCCGCTGTGTTTGCCAAGCC-GTTCCCTTGGCTGTCGTTTCGCTA 670750 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 |||||||||||||||||||||||||||| |||||||||| Sbjct 670749 GATAGTAGATAGGGACAGTGGGAATCTCATTAATCCATT 670711 Score = 143 bits (158), Expect = 9e-32 Identities = 92/99 (93%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||||||||||| | |||||||| |||||||||||||| ||||||||| Sbjct 673615 ACAGGGTCTTCTTTCCCCGCTGTGTTTGCCAAGCC-GTTCCCTTGGCTGTCGTTTCGCTA 673557 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 |||||||||||||||||||||||||||| |||||||||| Sbjct 673556 GATAGTAGATAGGGACAGTGGGAATCTCATTAATCCATT 673518 >seq13563 Length=764 Score = 132 bits (146), Expect = 2e-28 Identities = 140/182 (77%), Gaps = 3/182 (2%) Strand=Plus/Minus Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 ||||||||| |||||||| ||||| ||| | |||||| ||||| ||||| | || || Sbjct 320 AGCTCAACAAGGTCTTCTCTCCCCACTGTATTTGCCAAGTCCGTTTTCTTGGGTATGCTT 261 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 | || | || || || || ||||||||||||||||||| ||||| || ||| || Sbjct 260 TTGCCAAGTATTAAGTATAGAACGTGGGAATCTCGTTAATCCCTTCATATGCATCATGAA 201 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 ||| | || ||||| |||||||| | || || || |||||||||||| |||||||||| Sbjct 200 TTAAACGAGGAGGC-TTTGGCTATCCTA--AGCGTTATAGTTACTCCCATCGTTTACCCG 144 Query 470 CG 471 || Sbjct 143 CG 142 >seq473 Length=125587 Score = 132 bits (146), Expect = 2e-28 Identities = 140/182 (77%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 ||||||||| |||||||| ||||| ||| | |||||| ||||| ||||| | || || Sbjct 22915 AGCTCAACAAGGTCTTCTCTCCCCACTGTATTTGCCAAGTCCGTTTTCTTGGGTATGCTT 22974 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 | || | || || || || ||||||||||||||||||| ||||| || ||| || Sbjct 22975 TTGCCAAGTATTAAGTATAGAACGTGGGAATCTCGTTAATCCCTTCATATGCATCATGAA 23034 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 ||| | || ||||| |||||||| | || || || |||||||||||| |||||||||| Sbjct 23035 TTAAACGAGGAGGC-TTTGGCTATCCTA--AGCGTTATAGTTACTCCCATCGTTTACCCG 23091 Query 470 CG 471 || Sbjct 23092 CG 23093 >seq189 Length=61887 Score = 109 bits (120), Expect = 2e-21 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| |||| || ||| |||| ||||||||||||||||||| | Sbjct 43699 CTTTTACTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACG 43640 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 ||| |||||||| ||||||||| |||||||||| ||||||| |||| || Sbjct 43639 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTC 43590 >seq1 Length=27028 Score = 102 bits (112), Expect = 3e-19 Identities = 58/59 (98%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 24894 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTTACATTCAGAGCACTGGGCAGAAATCA 24952 >seq171 Length=453245 Score = 96.9 bits (106), Expect = 1e-17 Identities = 162/228 (71%), Gaps = 21/228 (9%) Strand=Plus/Plus Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||| | ||||||| |||||| || || ||| |||| ||| | || || | Sbjct 262463 TCAACAAAATTTTCTTTCTCCGCTGTTTTGGCAAAG----TTCCTTTGACCGTATTT--G 262516 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||||||||| | ||||||||||||| || |||||||||| ||| ||||||| ||||| Sbjct 262517 CTAGATAGTAGAGAAGGACAGTGGGAATTTCATTAATCCATTTATG-GCGTCACGAATTA 262575 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 | || || | | | ||||| ||| | || | ||| | ||| | || || Sbjct 262576 AGTAACAAGCGAACT-GTTACCTGAAG-CATTC-CATTTATTACCG-CTTTCAC------ 262625 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||| |||||||| ||| |||| |||||| |||||| |||||| Sbjct 262626 ----TTGATTTTCTTCATTTTTGCATTTAGAGCATTGGGCAAAAATCA 262669 >seq1603 Length=127655 Score = 80.6 bits (88), Expect = 9e-13 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 435 TTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTG 494 |||||| ||| ||||| |||||||||||||| || |||||| | |||||||||| ||| Sbjct 125728 TTAAGAAAGTTATAGTGACTCCCGCCGTTTAGTCGGGCTTGG-TAAATTTCTTCA-TTTT 125785 Query 495 ACATTCAGAGCACTGGGCAGAAATCA 520 | ||||| |||||| || ||||||| Sbjct 125786 ATATTCAAGGCACTGAGCCGAAATCA 125811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634941066080