Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_033701.1 Length=11743 Score E Sequences producing significant alignments: (Bits) Value seq14993 188 5e-44 seq14623 152 4e-33 >seq14993 Length=1107 Score = 188 bits (208), Expect = 5e-44 Identities = 314/449 (70%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 729 GCCATTGACATGTTTCTGCGGAAGTTCCCCAATCATCAATACGAAAAGTTACGTGCGTGT 788 || || || ||||| | | || ||||| ||||| ||| |||||||| || || || Sbjct 644 GCAATCGATATGTTCTTCAGAAAATTCCCGAATCACAAATTCGAAAAGTATCGAGCATGC 703 Query 789 ACTCTCGGGACTTTTTTGAAGGATTGTGTCGTGATGTCGTCCGTCAACCAGGCTGC-CGA 847 ||||| || | |||||||| ||||| || ||||| | || | || || || || | | Sbjct 704 ACTCTGGGCGCATTTTTGAAAGATTGCGTAGTGATAACATCTTTGAATCAAGCAGCGCAA 763 Query 848 TGCTTTATTAACTAGTCCTCCCATTCTTCTTCAATACGTCTTCAGCCGTGACATTGCAAC 907 ||| || || || || | || | |||||||| || || ||| || |||||| Sbjct 764 TGCCTTTCTACTGAG-CCAAGCGTTTTGCTTCAATATGTGTTTAGCAAAGATATTGCAGA 822 Query 908 TGATGTCAGACATATAATTGGGGGTGAACCCACAGAGGAGAAAACAACT--GATCATTCT 965 ||||||||||| | || ||||||| || || |||||| || || ||||| Sbjct 823 TGATGTCAGACGGCTTATCGGGGGTGGTCCGCATGA--AGAAAAGAATGTAGACCATTCA 880 Query 966 TATTTCCAATATATGAGAGAGATGAATTTGGTTCCTCGTTCCGCATATTCTGCAAGTTTA 1025 || || || |||||||||||||||||| | | || | || ||||||| ||| | | Sbjct 881 TACTTTCAGTATATGAGAGAGATGAATCTAATACCCAGGTCTCCATATTCAGCATCTATC 940 Query 1026 AATCCTAATTTGTTCTTATGGTGCCAATTTATTGGGGTACTGCTCGGGAAACGACGTTCA 1085 |||||||| |||| |||||||| || |||||||| || | |||||| |||| ||| Sbjct 941 AATCCTAACCTGTTTACTTGGTGCCAGTTCATTGGGGTTCTAATGGGGAAAAGACGATCA 1000 Query 1086 ATGTATGCTCGGCTCTTGGAATGCTCCAGCCCTACAATGATCCTAGTTCATGCCTGCTAT 1145 | || || | || ||||| || | |||||| | ||| | || ||| |||| | |||| Sbjct 1001 GTCTACGCAAGACTATTGGATTGTTTCAGCCCATCGATGCTTCTTGTTTATGCGTCCTAT 1060 Query 1146 GTCGTTTATTATTTGTCAGGCAGTCCTGA 1174 || |||||||| | ||||| | ||| || Sbjct 1061 GTGGTTTATTACATCTCAGGAACTCCAGA 1089 >seq14623 Length=969 Score = 152 bits (168), Expect = 4e-33 Identities = 300/437 (69%), Gaps = 14/437 (3%) Strand=Plus/Plus Query 727 CTGCCATTGACATGTTTCTGCGGAAGTTCCCCAATCATCAATACGAAAAGTTACGTGCGT 786 |||| | |||||||| | | || ||||||||||| ||| ||||| | || || | Sbjct 520 CTGCTGTGGACATGTTCTTTAGAAAAATCCCCAATCATAAATTTGAAAAATATCGAGCAT 579 Query 787 GTACTCTCGGGACTTTTTTGAAGGATTGTGTCGTGATGTCGTCCGTCAACCAGGCTGCCG 846 | || || || || || | || ||||| || || || | || | || || || ||| Sbjct 580 GCACACTGGGTACATTCCTCAAAGATTGCGTGGTCATCACTTCTCTTAATCAAGCAGCCC 639 Query 847 A-TG---CTTTAT-TAACTAGTCCTCCCATTCTTCTTCAATACGTCTTCAGCCGTGACAT 901 | || || ||| ||| || | | | |||||||| || || ||| ||||| Sbjct 640 AGTGTCTCTCTATAGAACCAG-----CTGTATTACTTCAATATGTATTTAGCAAAGACAT 694 Query 902 TGCAACTGATGTCAGACATATAATTGGGGGTGAACCCACAGAGGAGAAAACAAC--TGAT 959 |||| ||||||| ||| ||||||| || | ||||| | |||||| ||| ||| Sbjct 695 TGCAGATGATGTCCGACGACTAATTGGAGGAG-GTCCACA-TGAAGAAAAGAACGTTGAC 752 Query 960 CATTCTTATTTCCAATATATGAGAGAGATGAATTTGGTTCCTCGTTCCGCATATTCTGCA 1019 ||||| |||||||| |||||||||||||||||| || | || | ||| | || || ||| Sbjct 753 CATTCATATTTCCAGTATATGAGAGAGATGAATCTGATACCGAGATCCCCTTACTCAGCA 812 Query 1020 AGTTTAAATCCTAATTTGTTCTTATGGTGCCAATTTATTGGGGTACTGCTCGGGAAACGA 1079 | |||||||| ||||| ||||| ||||| || || || ||| | || ||| || Sbjct 813 TCAATCAATCCTAACCTGTTCACCTGGTGTCAATTCATCGGAGTTCTGATGGGCAAAAGA 872 Query 1080 CGTTCAATGTATGCTCGGCTCTTGGAATGCTCCAGCCCTACAATGATCCTAGTTCATGCC 1139 ||||| | ||||| | | |||| || | ||| || ||||| | || || ||||| Sbjct 873 CGTTCGGTCCATGCTAGATTACTGGACTGTTTCAGTCCGTCAATGCTTCTTGTGTATGCC 932 Query 1140 TGCTATGTCGTTTATTA 1156 | ||||| || ||||| Sbjct 933 TCTTATGTTGTGTATTA 949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37455726307580