Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq6712 235 2e-59 seq11269 230 1e-57 seq4269 138 5e-30 >seq6712 Length=2860 Score = 235 bits (260), Expect = 2e-59 Identities = 227/287 (79%), Gaps = 12/287 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 || ||||||||| |||||||||||||||||||||||| | ||||||| |||| | || Sbjct 1607 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCGAGTCGGCGGGTTTGAA 1548 Query 465 ACCCGTGCG---CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-----GAGGGTGCACC 516 | || |||| || || ||| ||| ||| | | || ||| | | ||||||| | Sbjct 1547 AACC-TGCGAGGCGCAAGGAAGCTGA-CGG--GCGAGATCCCCTCTCTGGGGGGTGCATC 1492 Query 517 ATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGA 576 |||||||| | ||| | | || || || |||| ||||| | |||||||||||||| Sbjct 1491 GTCGACCGACCTTGAGCTTATGCGAAGGGTTCGAGTGCGAGCACACCTGTTGGGACCCGA 1432 Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCA 636 ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | Sbjct 1431 AAGATGGTGAACTATGCCTGAGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTA 1372 Query 637 GCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 1371 GCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 1325 Score = 172 bits (190), Expect = 2e-40 Identities = 137/165 (83%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| |||| |||| |||||||| | || || || Sbjct 1994 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCTAATTGGGTGGTAAATTCCGTCCAAGGC 1935 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| ||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 1934 TAAATACGGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 1875 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||||||| || | |||||||| | ||||||||| Sbjct 1874 TGAAAAGAGAGTTAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 1830 >seq11269 Length=1554 Score = 230 bits (254), Expect = 1e-57 Identities = 224/283 (79%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGT--GTC 462 |||||||||||| ||||||||||||||||||| |||| | ||||||| ||| || Sbjct 682 CGGCCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCCAGT- 624 Query 463 AAACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT-GCACCATCG 520 |||||||| | || || ||| ||| || || || ||| |||| ||||| || Sbjct 623 AAACCCGTAAGGCGCAAGGAAGCTGATTGGCGG---GATCCCTCACGGGTTGCACCGCCG 567 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| ||||||| |||| ||||||||||||| Sbjct 566 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGAGAGCATGCCTGTCGGGACCCGAAAGA 507 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 506 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 447 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 446 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 404 Score = 156 bits (172), Expect = 2e-35 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| | || || |||||| Sbjct 1062 CGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAAATTCCGTCCAAGGCTAAA 1003 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || ||| ||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 1002 TACGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 943 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | ||||||||| Sbjct 942 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 902 >seq4269 Length=4205 Score = 138 bits (152), Expect = 5e-30 Identities = 128/161 (80%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 26 GAAGCTCCTTCGACG-AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTT 84 |||| | ||| ||| ||||| |||| ||| | |||||| | || ||||||||||| | Sbjct 276 GAAGAGCTTTCCACGGAGTCGTGTTGCTTGATAGTGCAGCACAAAGTGGGAGGTAAACTC 335 Query 85 CTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATG 144 ||||||||||||||||| | ||||||||||||| ||||||| |||| ||||| || Sbjct 336 CTTCTAAAGCTAAATATCACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTG 395 Query 145 AAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTG 185 ||||||||| || | ||||||| ||| || |||||||| || Sbjct 396 AAAAGCACTCTGAATAGAGAGTCAAACAGTACGTGAAACTG 436 Score = 134 bits (148), Expect = 6e-29 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 || |||||||||||||||||||||||||||| ||| ||||| ||| |||||| ||| || Sbjct 1004 TGTGACCCGAAAGATGGTGAACTATGCCTGATCAGGTTGAAGTCAGGGGAAACCCTGATG 1063 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || ||| |||||| ||||||||||||| |||| | ||||| |||||||||| Sbjct 1064 GAGGACCGAAGCAGTTCTGACGTGCAAATCGATTGTCAGAATTGGGCATAGGGGCGA 1120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079485993650