Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq13901 107 2e-21 seq16405 89.7 5e-16 seq7506 86.0 6e-15 >seq13901 Length=1140 Score = 107 bits (118), Expect = 2e-21 Identities = 137/181 (76%), Gaps = 12/181 (7%) Strand=Plus/Minus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| | |||||| ||||||||||||| |||||| ||||| |||| Sbjct 704 GGTGGATGCCTTGGCGATGATAGGCGACGAAGGACGTGATAGCCTGCGATAAGCTTCGGG 645 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAAC---CCGATA--TAT 121 || ||||| || | |||||||| |||| ||||||||||| ||| |||| | ||| Sbjct 644 GAGCTGGCAAATTAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCCACCGAAAGGTAT 585 Query 122 TGGA-GATATAT-CATAACGCTAGGCGTTAGGCGAACGTGGGGAACTGAAACATCTAAGT 179 | | ||| || |||| | | ||| |||||||| || |||||||||||||| ||| Sbjct 584 CGCATGATGAATACATA--GTCATGCG--AGGCGAACCGGGTGAACTGAAACATCTCAGT 529 Query 180 A 180 | Sbjct 528 A 528 >seq16405 Length=855 Score = 89.7 bits (98), Expect = 5e-16 Identities = 135/187 (72%), Gaps = 9/187 (5%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| | ||||||||||| ||| | |||||| ||||||||| || ||||| |||| Sbjct 32 GCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGC 91 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATA 120 | |||||| | ||| | | |||||||| |||| ||||||||||| |||||| | Sbjct 92 TGCGGGGAGCTAGCAAACGAGCTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCTT 151 Query 121 TTGGAGATATATCAT----AACGC-TAGGC--GTTAGGCGAACGTGGGGAACTGAAACAT 173 || | | || ||| || | ||||| | | ||||||| || |||||||||||| Sbjct 152 TTAG-GTCATTGCATGCTGAATACATAGGCATGCAAAGCGAACGCGGCGAACTGAAACAT 210 Query 174 CTAAGTA 180 ||||||| Sbjct 211 CTAAGTA 217 >seq7506 Length=2542 Score = 86.0 bits (94), Expect = 6e-15 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 2 GCAGACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGC 61 ||| ||||||||||||| ||| || ||||||| |||||||||| | |||||||||| Sbjct 42 GCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAAAGT 101 Query 62 TACGGGGA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCC 114 |||||| ||||| | | | |||||||| || ||||||||||| ||||| Sbjct 102 ATCGGGGAGCTGGCA-ACAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCC 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476689314903