Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq21111 152 7e-35 seq7506 152 7e-35 seq12715 149 9e-34 seq9987 116 5e-24 seq11634 113 6e-23 >seq21111 Length=591 Score = 152 bits (168), Expect = 7e-35 Identities = 182/248 (73%), Gaps = 22/248 (9%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| |||||||||||||||| || |||||||| ||||| | || ||| Sbjct 516 CTTAACCTTCCAGCACCGGGCAGGCGTCACCCCCTATACATCATCTTACGAT-TTAGCAG 458 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 || |||||||||| |||||||| |||| |||||| ||||| ||| | Sbjct 457 AGAGCTGTGTTTTTGATAAACAGTTGCTTGGGCCTATTCACTGCG----------GCTGA 408 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || || ||| || ||||||||||||||||||||||||||||||||||| Sbjct 407 CCA--TCAGTCA---------GCGCCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAG 359 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||||| | ||||| | || | ||| || | ||| | ||| |||||||||||| Sbjct 358 TTCCTTAACGAGAGTTCTCTCGCTCACCTGAGGCTACTCGCCTCGACTACCTGTGTCGGT 299 Query 241 TTACGGTA 248 || ||||| Sbjct 298 TTGCGGTA 291 >seq7506 Length=2542 Score = 152 bits (168), Expect = 7e-35 Identities = 187/250 (75%), Gaps = 4/250 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||||||| || ||||| || |||| | || || ||| Sbjct 1837 TTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 1779 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | |||||||||| ||||||||||| | || | |||||||| | ||||| | Sbjct 1778 GTGCTGTGTTTTTGATAAACAGTCGCAGCGGCCTGGTTACTGCGACCCTCTTCAGCTATA 1719 Query 122 -CACGT-CGTTC-ACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCG 178 | || || | |||| | || | ||||||||||||||||||| ||||| ||||| Sbjct 1718 GCTCGCACGAGCCACCAAAAAGGGTGCACCTTCTCCCGAAGTTACGGTGCCATGTTGCCT 1659 Query 179 AATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCG 238 | |||||| ||| ||||| | | | ||||| || |||||| ||| |||||||||||| Sbjct 1658 AGTTCCTTCACCCGAGTTCTCTCAAGCGCCTGAGAATTCTCATCCTACCCACCTGTGTCG 1599 Query 239 GTTTACGGTA 248 |||||||||| Sbjct 1598 GTTTACGGTA 1589 >seq12715 Length=1303 Score = 149 bits (164), Expect = 9e-34 Identities = 186/252 (74%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||| ||| || ||||| || |||| | || || ||| Sbjct 626 TTAACCTTCCAGCACCGGGCAGGCATCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 568 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | || |||||||| |||||||| || | || | |||||| | ||| | ||||| Sbjct 567 GTGCTATGTTTTTAATAAACAGTTGCAGCGGCCTGGTTTCTGCGGCTGCCAACCGCTCAG 508 Query 122 ----CACGTCGT-TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176 || ||| ||||| ||| || ||||||||||||||||||| ||||||||| Sbjct 507 GGAGCAAGTCCCATCACCGTCAGCAGCGTACCTTCTCCCGAAGTTACGGTACCATTTTGC 448 Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 | | |||||| | || ||||| | | | ||| || || | ||| |||||||||||||||| Sbjct 447 CTAGTTCCTTCAGCAGAGTTCTCTCAAGCGCTTTGGTCTACTCGACCTGACCACCTGTGT 388 Query 237 CGGTTTACGGTA 248 |||||| |||| Sbjct 387 CGGTTTCGGGTA 376 >seq9987 Length=1829 Score = 116 bits (128), Expect = 5e-24 Identities = 177/248 (71%), Gaps = 8/248 (3%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| |||||||||||||||| || ||||| || |||| | || || ||| | || Sbjct 662 CTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGAGTGCT 604 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGC--TCAACAC 124 ||||||||| ||||||||||| || | || ||| ||| | || | || ||| Sbjct 603 GTGTTTTTATTAAACAGTCGCAGCCACCATTTTATTGCAACC-CGTTCATCCTTCCACAG 545 Query 125 ----GTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || || | | | ||| |||| |||||||||||||| ||| |||||||| Sbjct 544 TAAAGTGGTCAAACTACTAGGGCGTACCTTATCCCGAAGTTACGGTACCAATTTGCCGAG 485 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| || ||||| | | | |||||||| || ||| | | |||||||||||||| Sbjct 484 TTCCTTCTCCCGAGTTCTCTCAAGCGCCTTAGAATACTCATCTCGCCCACCTGTGTCGGT 425 Query 241 TTACGGTA 248 || ||||| Sbjct 424 TTGCGGTA 417 >seq11634 Length=1480 Score = 113 bits (124), Expect = 6e-23 Identities = 96/117 (82%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||||||||| |||||||| || ||||| | |||||||| Sbjct 1365 CTTAACCTTCCGGCACCGGGCAGGCGTCAGAGCGTATACAGCGGCTTAC-GCCTTCGCAC 1423 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGC 117 | ||||||||||| ||||||||||||| ||| ||| | ||| ||| ||| |||| Sbjct 1424 GCTCCTGTGTTTTTGGTAAACAGTCGCTACCCCCTAGCTTGTGCCACCCCCAACAGC 1480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694238800899