Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24]
23,963 sequences; 64,930,714 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq1173 190 3e-46
seq1345 187 4e-45
seq19375 159 6e-37
seq4269 100 5e-19
>seq1173
Length=9216
Score = 190 bits (210), Expect = 3e-46
Identities = 181/230 (79%), Gaps = 20/230 (9%)
Strand=Plus/Minus
Query 69 TAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCT 128
||||||||| |||| |||| || | |||| | ||||||||| |||
Sbjct 9214 TAAACCCAGTTCACATTCCTTACTGGTGG-TATACAATCCAA--------------TGCC 9170
Query 129 TCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188
||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 9169 TCGCAATGATAGAAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 9110
Query 189 GGCTGCCACAAGCCAGTTATCCCTGTG-GT-AACTTTTCTGGCACCTCTAGCCTCAAATT 246
||||||||||||||||| |||| |||| || ||||||| ||||||| || ||| |
Sbjct 9109 GGCTGCCACAAGCCAGTGATCCTTGTGTGTGTGTTTTTCTGACACCTCTTGCTAGAAACT 9050
Query 247 TCGAGGGA---CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|| | | | | |||||||||||||||||| ||||| |||| |||||||
Sbjct 9049 TCTAAGAAATTCAAAAGGATCGATAGGCCACGCTTTCGTGGTCTGTATTC 9000
>seq1345
Length=8665
Score = 187 bits (206), Expect = 4e-45
Identities = 135/154 (88%), Gaps = 4/154 (3%)
Strand=Plus/Minus
Query 144 GAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8665 GAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 8606
Query 204 GTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGA---CTAAA 259
|||||||||||||||||||||||| ||||||| || ||| ||| | | | |||
Sbjct 8605 GTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAGAAACCTTCTAAAAAATTCAAAA 8546
Query 260 GGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
||||||||||||||| ||||| ||| |||||||
Sbjct 8545 GGATCGATAGGCCACGCTTTCGCGGTCTGTATTC 8512
>seq19375
Length=664
Score = 159 bits (176), Expect = 6e-37
Identities = 100/108 (93%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 108 TCAACAGTAGGATAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 49
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT 138
||||||||||||||||||||||||| |||| ||||||||| |||||
Sbjct 48 TTAGTGGGTGAACAATCCAACGCTTGGCGAAATCTGCTTCGCAATGAT 1
>seq4269
Length=4205
Score = 100 bits (110), Expect = 5e-19
Identities = 68/75 (91%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91
|| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 3682 CACCAGGAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT-T 3624
Query 92 TAGTGGGTGAACAAT 106
| |||||||||||
Sbjct 3623 GAAAGGGTGAACAAT 3609
Score = 75.2 bits (82), Expect = 2e-11
Identities = 44/46 (96%), Gaps = 0/46 (0%)
Strand=Plus/Minus
Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238
||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 3554 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGC 3509
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854195260128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |