Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1173 190 3e-46 seq1345 187 4e-45 seq19375 159 6e-37 seq4269 100 5e-19 >seq1173 Length=9216 Score = 190 bits (210), Expect = 3e-46 Identities = 181/230 (79%), Gaps = 20/230 (9%) Strand=Plus/Minus Query 69 TAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCT 128 ||||||||| |||| |||| || | |||| | ||||||||| ||| Sbjct 9214 TAAACCCAGTTCACATTCCTTACTGGTGG-TATACAATCCAA--------------TGCC 9170 Query 129 TCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188 ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9169 TCGCAATGATAGAAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 9110 Query 189 GGCTGCCACAAGCCAGTTATCCCTGTG-GT-AACTTTTCTGGCACCTCTAGCCTCAAATT 246 ||||||||||||||||| |||| |||| || ||||||| ||||||| || ||| | Sbjct 9109 GGCTGCCACAAGCCAGTGATCCTTGTGTGTGTGTTTTTCTGACACCTCTTGCTAGAAACT 9050 Query 247 TCGAGGGA---CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || | | | | |||||||||||||||||| ||||| |||| ||||||| Sbjct 9049 TCTAAGAAATTCAAAAGGATCGATAGGCCACGCTTTCGTGGTCTGTATTC 9000 >seq1345 Length=8665 Score = 187 bits (206), Expect = 4e-45 Identities = 135/154 (88%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 144 GAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8665 GAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 8606 Query 204 GTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA-TTTCGAGGGA---CTAAA 259 |||||||||||||||||||||||| ||||||| || ||| ||| | | | ||| Sbjct 8605 GTTATCCCTGTGGTAACTTTTCTGACACCTCTTGCTAGAAACCTTCTAAAAAATTCAAAA 8546 Query 260 GGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||||||||| ||||| ||| ||||||| Sbjct 8545 GGATCGATAGGCCACGCTTTCGCGGTCTGTATTC 8512 >seq19375 Length=664 Score = 159 bits (176), Expect = 6e-37 Identities = 100/108 (93%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 108 TCAACAGTAGGATAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 49 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGAT 138 ||||||||||||||||||||||||| |||| ||||||||| ||||| Sbjct 48 TTAGTGGGTGAACAATCCAACGCTTGGCGAAATCTGCTTCGCAATGAT 1 >seq4269 Length=4205 Score = 100 bits (110), Expect = 5e-19 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 || ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 3682 CACCAGGAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT-T 3624 Query 92 TAGTGGGTGAACAAT 106 | ||||||||||| Sbjct 3623 GAAAGGGTGAACAAT 3609 Score = 75.2 bits (82), Expect = 2e-11 Identities = 44/46 (96%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 193 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||||||||||||||||||||||||||||||||||| ||||||| || Sbjct 3554 GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTGC 3509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854195260128