Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq12715 221 2e-55 seq9987 188 1e-45 seq7506 181 2e-43 seq21601 168 1e-39 seq11634 158 2e-36 >seq12715 Length=1303 Score = 221 bits (244), Expect = 2e-55 Identities = 248/321 (77%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 22 AGATGGATACGCCAGTATTCAA-GGAGCCGCTGTTGGGATACTACCCCTGTTGTATTGGA 80 || |||| |||| ||| | ||| ||||||| ||| |||| |||| || | ||| Sbjct 979 AGTTGGA-ACGCTAGT-TCCAATGGAGCCGTCCTTGAAATACCACCCTGGTAATGTTGAG 1036 Query 81 TTTCTAAC-CGGACGACGTATAACCGTTGACG-GGACAGTGTCAGTCGGGCAGTTTGACT 138 ||||||| | | | |||| | ||| |||| |||| |||| | ||| ||||||||| Sbjct 1037 GTTCTAACTCTGTCC-CGTA-ATCCGG-GACGAGGACCATGTCTGGTGGGTAGTTTGACT 1093 Query 139 GGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGA 198 ||||||||| ||||| ||||||||||||||| | | ||| | | |||||| ||| ||| Sbjct 1094 GGGGCGGTCTCCTCCTAAAGAGTAACGGAGGAGTACGAAGGTGCGCTCAGCGTGGTCGGA 1153 Query 199 AACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCA 258 || || ||| | ||| ||||||||||| | | || ||||||| |||| |||||| |||| Sbjct 1154 AATCACGCGTAGAGTATAAAGGCAAAAGCGCGCTTAACTGCGAGACCCACAAGTCGAGCA 1213 Query 259 GGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGG 318 || |||||||| || |||| |||||||| ||| ||| |||||| |||| |||||| |||| Sbjct 1214 GGTACGAAAGTAGGTCTTAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGCTCAACGG 1273 Query 319 ATAAAAGCTACCCTGGGGATA 339 ||||||| ||| ||||||||| Sbjct 1274 ATAAAAGGTACTCTGGGGATA 1294 >seq9987 Length=1829 Score = 188 bits (208), Expect = 1e-45 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | ||||||||||||||||||||| ||||| |||| |||||||||| Sbjct 1034 GGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCTAAAGTGTAACGGAGGA 1093 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | | ||| ||| || | || ||| | | ||| | ||||||| |||| ||| ||| Sbjct 1094 GTTCGAAGGTACGCTAGGTACGGTCGGACATCGTGCTAATAGTGCAATGGCATAAGCGTG 1153 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 || ||||||| ||| |||||| |||||| |||||||| || | || |||||||| ||| Sbjct 1154 CTTAACTGCGAGACCGACAAGTCGAGCAGGTACGAAAGTAGGACATAGTGATCCGGTGGT 1213 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| |||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 1214 TCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 1262 Score = 96.9 bits (106), Expect = 7e-18 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 252 TCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGC 311 || |||||| |||||||| || | || |||||||| ||| ||| |||||| |||| |||| Sbjct 1270 TCGAGCAGGTACGAAAGTAGGACATAGTGATCCGGTGGTTCTGTATGGAAGGGCCATCGC 1329 Query 312 TCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||||||||| ||| ||||||||| Sbjct 1330 TCAACGGATAAAAGGTACTCTGGGGATA 1357 >seq7506 Length=2542 Score = 181 bits (200), Expect = 2e-43 Identities = 180/231 (78%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||| |||| | ||| |||||||||||||||||| ||||| ||||||||||||||| Sbjct 2283 GGGACCGTGTATGGTGGGTAGTTTGACTGGGGCGGTCTCCTCCTAAAGAGTAACGGAGGA 2342 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC--AGTGCAAAGGCAAAAGGG 228 || | ||| ||| |||||| || ||| | | |||||| ||||||||||| ||| | Sbjct 2343 GCTCGAAGGTACGCTCAGCGCGGTCGGACATC--GCGCACTGTGTGCAAAGGCATAAGCG 2400 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||||| | | | | || |||||| | |||| | || |||| |||||||| | Sbjct 2401 TGCTTGACTGCAAGATCGACGGATCAAGCAGGTAGGAAACTAGGACTTAGTGATCCGGTG 2460 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||| |||||| |||| |||||| ||||||||||| ||| | ||||||| Sbjct 2461 GTTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCCGGGGATA 2511 >seq21601 Length=573 Score = 168 bits (186), Expect = 1e-39 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | ||||||||||||||||||||| |||||||||| |||||||||| Sbjct 318 GGGACAGTGCATGGTAGGCAGTTTGACTGGGGCGGTCTCCTCCCAAAGCGTAACGGAGGA 377 Query 171 GCCCAAAGATACCCTCAGCTTGGAT-GGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 | | ||| ||| || || | | | ||| | | || | ||||||| |||| ||| || Sbjct 378 GTTCGAAGGTACGCT-AGTTACGGTCGGACATCGTGACGATAGTGCAATGGCATAAGCGT 436 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | || ||||||| || |||||| ||||| |||||| || | || |||||||| || Sbjct 437 GCTTAACTGCGAGACTGACAAGTCGAGCAGATGCGAAAGCAGGACATAGTGATCCGGTGG 496 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | ||| |||||| |||| |||||| ||||||||||| ||| ||||||||| Sbjct 497 TTCTGTATGGAAGGGCCATCGCTCAACGGATAAAAGGTACTCTGGGGATA 546 >seq11634 Length=1480 Score = 158 bits (174), Expect = 2e-36 Identities = 192/258 (74%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 83 TCTAACCG-GACGACGTATAACCGTTGACGGGACAGTGTCAGTCGGGCAGTTTGACTGGG 141 ||||||| ||| |||| || |||| ||||||||| | | |||| ||||| |||||| Sbjct 1025 TCTAACCTCGAC-ACGT-TATCCGTGTCAGGGACAGTGCCTGGCGGGTAGTTTAACTGGG 968 Query 142 GCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAAC 201 ||||| |||||| |||||||||||||||||| ||| | | | |||||| || ||| || Sbjct 967 GCGGTTGCCTCCTAAAGAGTAACGGAGGCGCTCAATGGTCCGCTCAGCCCGGTTGGCAAT 908 Query 202 CATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGG 261 | | | |||| || ||| ||| | | ||||||| || || | ||| ||||||| Sbjct 907 CGGGTGTTGAGTGTAATCGCACAAGCGGGCTTGACTGTGAGACTGACGGGTCGAGCAGGG 848 Query 262 ACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATA 321 ||||||||||| || |||||||| | | | | ||| | | |||||| ||||||| Sbjct 847 ACGAAAGTCGGAGATAGTGATCCGGTGCCGGCGTACGGACGTGGCATCGCTCAACGGATA 788 Query 322 AAAGCTACCCTGGGGATA 339 |||| ||||| ||||||| Sbjct 787 AAAGGTACCCCGGGGATA 770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982164587488