Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq7506 134 2e-29 seq12715 131 2e-28 seq11634 122 1e-25 seq21601 118 1e-24 seq9987 118 1e-24 >seq7506 Length=2542 Score = 134 bits (148), Expect = 2e-29 Identities = 120/152 (79%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | |||| | | |||||||||| | | | ||||||||||| Sbjct 2128 CGGGGTCTTTCCGTCTTGCCACGGGAACGCTGCATCTTCACAGCGATTTCAATTTCACTG 2069 Query 83 AGCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACC 141 || || ||| || |||||| ||| ||||||||||||||||||||||||| Sbjct 2068 AG-TCTCGGGTGGAGACAGCGCCGCTGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 2010 Query 142 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||| Sbjct 2009 CGACAAGGAATTTCGCTACCTTAGGACCGTTA 1978 Score = 96.9 bits (106), Expect = 4e-18 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 122 CGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNN 181 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1953 CGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACG 1894 Query 182 NNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||| Sbjct 1893 GCCGCCGTTTACTGGGGCTTC 1873 >seq12715 Length=1303 Score = 131 bits (144), Expect = 2e-28 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| |||||||| | |||||||||| | | | | ||||||||| Sbjct 911 CGGGGTCTTTCCGTCTAGCCGCGGGTACACTGCATCTTCACAGCGATTTCGATTTCACTG 852 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 ||| | | ||||||| || |||||||||||||||||||||||||| Sbjct 851 AGCCTCTGCTGGAGACAGCGCCGCCATCATTATGCCATTCGTGCAGGTCGGAACTTACCC 792 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 791 GACAAGGAATTTCGCTACCTTAGGACCGTTA 761 Score = 96.9 bits (106), Expect = 4e-18 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 122 CGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTANNNNNNNN 181 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 740 CGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACG 681 Query 182 NNNNNNGTTTACTGGGGCTTC 202 ||||||||||||||| Sbjct 680 GCCGCCGTTTACTGGGGCTTC 660 >seq11634 Length=1480 Score = 122 bits (134), Expect = 1e-25 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||||||||| ||| ||| ||||||| || |||| ||||||| | | Sbjct 1153 CGGGGTCTTTTCGTCCTTCTGCGCTTAACGAGCATCTTTACTCGTACTGCAATTTCGCCG 1212 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 |||| || ||||||| ||| |||||||||||||||||||||||||| Sbjct 1213 GGCTCCTGGCCGAGACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 1272 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||| |||| Sbjct 1273 GACAAGGAATTTCGCTACCTTAGGATGGTTA 1303 >seq21601 Length=573 Score = 118 bits (130), Expect = 1e-24 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||| | ||||| |||| | | | ||| ||| |||| Sbjct 162 GGGGTCTTTCCGTCTTTCCGCGGGGAGATTGCATCATCACAAACATTTCAACTTCGCTGA 103 Query 84 G-CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | |||| || ||||||| ||| |||||||||||||||||||||||||| Sbjct 102 GTCTCA-GGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 44 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 43 GACAAGGAATTTCGCTACCTTAGGACCGTTA 13 >seq9987 Length=1829 Score = 118 bits (130), Expect = 1e-24 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 24 GGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGA 83 ||||||||| |||| |||||||| ||||| |||| | | | ||| ||| |||| Sbjct 878 GGGGTCTTTCCGTCTAGCCGCGGGTAGATTGCATCATCACAAACATTTCAACTTCGCTGA 819 Query 84 GCTCACGGTTG-AGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || ||| | |||||| ||| |||||||||||||||||||||||||| Sbjct 818 G-TCTCGGGAGGAGACAGTGTGGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 760 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 759 GACAAGGAATTTCGCTACCTTAGGACCGTTA 729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547072972137