Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq7472 432 8e-119 seq13289 385 1e-104 seq13397 313 5e-83 seq18386 194 4e-47 seq14599 159 7e-37 seq20252 152 1e-34 >seq7472 Length=2552 Score = 432 bits (478), Expect = 8e-119 Identities = 299/336 (89%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| ||| ||||||| || ||||||||||||||| ||||| Sbjct 1046 CTTTACAACCCGAAGGCCTTCTT-CACCCACGCGGTAT-GGCTGGATCAGGCTTGCGCCC 1103 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1104 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 1163 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||||| | Sbjct 1164 TGTGGCTGATCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCG 1223 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||||||| | ||||||| || |||||||| |||||| |||||||||| Sbjct 1224 CCAACTAGCTAATCCGACATCGGCTCATTCAATCGCGCAAGGTCCGAAGATCCCCTGCTT 1283 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || |||||||| |||||||||||||||||| |||||| |||||||||||||| || Sbjct 1284 TCACCCGTAGGTCGTATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGACAGA 1343 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 | ||||||| | | ||| |||||||||||||| ||| Sbjct 1344 GTAGATTCCGATGTATTCCTCACCCGTCCGCCACTC 1379 >seq13289 Length=1227 Score = 385 bits (426), Expect = 1e-104 Identities = 298/352 (85%), Gaps = 2/352 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| ||| |||||||||||| ||||||||||||| ||||| Sbjct 778 CTTTACAACCCGAAGGCCTTCTT-CACTCACGCGGCATTG-CTGGATCAGGCTTGCGCCC 835 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 836 ATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 895 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||| || |||||||||||||| ||| |||||||||||||||||||| |||||||| Sbjct 896 TGTGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCTCA 955 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 |||||||||||||| || | ||| || ||| ||||||||||||||||||||||| Sbjct 956 CCAACTAGCTAATCAGATATCGGCCGCTCCAGGAGCACAAGGCCCGAAGGTCCCCTGCTT 1015 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 || || ||| |||||||||||||||||| |||| ||||||||||||||| | Sbjct 1016 TCATCCTTAGATCGTATGCGGTATTAGCGTAACTTTCGCTACGTTATCCCCCACTCTTGG 1075 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTCTCAAGAGAAGCAAGCT 352 | | |||| | ||||||||||||| |||| ||| || | |||||||| Sbjct 1076 GTACGTTCCGATATATTACTCACCCGTTCGCCACTCGTCAGCGGAGCAAGCT 1127 >seq13397 Length=1212 Score = 313 bits (346), Expect = 5e-83 Identities = 272/335 (81%), Gaps = 2/335 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| ||||| | | |||||||||| ||||||||||||||| |||||| Sbjct 1055 TTTACAACCCGAAGGCCTTCATCCTG-CACGCGGCAT-GGCTGGATCAGGCTTGCGCCCA 998 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 997 TTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 938 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||| || |||||||||||||| ||| ||||| | ||||||||||| ||||||||| Sbjct 937 GTGGCTGGTCGTCCTCTCAGACCAGCTACAGATCGAAGGCTTGGTGAGCCTTTACCTCAC 878 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||||| |||||| | | | ||| || | |||||||| | | ||||||||||| Sbjct 877 CAACTACCTAATCTGCCATCGGCCGCTCCATTCGCGCAAGGTCTTGCGATCCCCTGCTTT 818 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 | |||||| |||||||||||||||| |||| ||||||||||||| | || Sbjct 817 CATCCGTAGATCGTATGCGGTATTAGCACAGCTTTCGCTGCGTTATCCCCCACGATTGGG 758 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || |||| | | ||||||||||||| |||| ||| Sbjct 757 CACGTTCCGATGTATTACTCACCCGTTCGCCACTC 723 >seq18386 Length=716 Score = 194 bits (214), Expect = 4e-47 Identities = 131/144 (91%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| | ||| ||||||| |||||||||||||| |||||||||||| || | ||| Sbjct 570 CTTTACAACCATAAGGCCTTCTT-CACACACGCGGCAT-GGCTGGATCAGGGTTCCCCCC 627 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 628 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 687 Query 121 TGTGACTGATCATCCTCTCAGACC 144 |||| | ||||||||||||||||| Sbjct 688 TGTGGCGGATCATCCTCTCAGACC 711 >seq14599 Length=1052 Score = 159 bits (176), Expect = 7e-37 Identities = 152/192 (79%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| ||||| | | | |||||||| | | ||| ||||| |||| |||| Sbjct 249 TTTACAACCCGAAGGCCTTCATCC-CGCACGCGGCGTCG-CTGCGTCAGGGTTTCCCCCA 306 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||| | Sbjct 307 TTGCGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAAT 366 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | | |||||||| || | ||| ||| |||| |||| ||||||||| | | Sbjct 367 GTGGCCGTCCGCCCTCTCAGGCCGGCTACCCGTCGAAGCCTAGGTGGGCCATTACCCCGC 426 Query 182 CAACTAGCTAAT 193 | || |||| || Sbjct 427 CTACAAGCTGAT 438 >seq20252 Length=625 Score = 152 bits (168), Expect = 1e-34 Identities = 147/189 (78%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 148 TACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCA 207 ||| ||||| | |||||| |||| ||||| ||||||||| |||||| | | | || Sbjct 1 TACAGATCGCAGGCTTGGTAAGCCTTTACCCCACCAACTACCTAATCTGCCATCAGCCGC 60 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 ||| |||| ||||||||||||||||||||||||| |||||| | |||||||||||| Sbjct 61 TCTAGTAGCACAAGGCCCGAAGGTCCCCTGCTTTCATCCGTAGATCTCATGCGGTATTAG 120 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCGT 327 | | |||| ||||||||||||||| ||||| |||| | | ||||||||||||| Sbjct 121 CTACTCTTTCGAGTAGTTATCCCCCACTACTAGGCACGTTCCGATGTATTACTCACCCGT 180 Query 328 CCGCCGCTC 336 |||| ||| Sbjct 181 TCGCCACTC 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071743116640