Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq16405 338 2e-90 seq7506 279 2e-72 seq13901 212 2e-52 seq18338 104 8e-20 seq4764 104 8e-20 >seq16405 Length=855 Score = 338 bits (374), Expect = 2e-90 Identities = 351/457 (77%), Gaps = 15/457 (3%) Strand=Plus/Minus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 |||||||| |||||| ||||||||||||| | ||||||| || |||||||||||||| Sbjct 841 ACCTAAATAGTTTTCGGAGAGAACCAGCTATTTCCAAGTTTGTTTAGCCTTTCACCCCTA 782 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTAC 261 |||||| ||||||||| | |||||||| | ||||||||||| |||||| | || |||| Sbjct 781 CCCACAGCTCATCCCCTAATTTTTCAACATTAGTGGGTTCGGACCTCCAGGGCGTGTTAC 722 Query 262 CCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCA 321 | ||||| |||| |||||| |||||||||| | ||||||||| | | || ||| Sbjct 721 CGCACCTTCATCCTGGCCATGGGTAGATCACTTGGTTTCGGGTCTACACCCAGCGACT-- 664 Query 322 TACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACAC 381 |||||| |||||||||| |||| |||||||| ||| | | |||||||||||| || Sbjct 663 GTCGCCCTGTTCGGACTCGATTTCTCTACGGCTCCCCTATTC-GGTTAACCTCGCCACTG 605 Query 382 AACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCA 441 || | || |||| | | |||| | ||||||| ||||||||||| || ||| Sbjct 604 AATG-TAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACC-----CCACGAAG--- 554 Query 442 CTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGG 501 |||||||| | ||||| ||||| ||||||||| |||||||||||||| || ||| Sbjct 553 ---AGGCTCCGACTGTTTGTATGCACACGGTTTCAGGATCTATTTCACTCCCCTCCCGGG 497 Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || |||||| |||||||||||||||||| || | ||||||||| | |||||||||| Sbjct 496 GTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTACGAGTATTTAGC 437 Query 562 CTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 ||| || ||||||| ||| |||| || ||||| Sbjct 436 CTTGGAGGATGGTCCCCCCATGTTCAGACAGGATTTC 400 >seq7506 Length=2542 Score = 279 bits (308), Expect = 2e-72 Identities = 397/546 (73%), Gaps = 21/546 (4%) Strand=Plus/Minus Query 49 TCCCGGCATTCGGAGTTTGGT-TGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCATC-C 105 || ||| |||||||||||| || ||| |||||| | | | |||||||| |||| | Sbjct 935 TCTCGGTATTCGGAGTTTGCAATGGTTT-GGTAAGTCGCGATGACCCCCTAG-CCATAAC 878 Query 106 AGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 ||||||||||| ||| || || ||| || || |||||||| ||||| ||||||| Sbjct 877 AGTGCTCTACCCCCGAGAGGATACATATGAGGCGCTACCTAAATAGCTTTCGAGGAGAAC 818 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT 225 |||||||| | ||| |||| || |||||| |||| |||| ||||||||| ||| Sbjct 817 CAGCTATCTCCGGGTTCGATTAGCTTTTCACTCCTAATCACACCTCATCCCCTACCTTTG 758 Query 226 CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGAT 285 |||| ||||||||||| |||||| || ||||| ||||| |||| |||| | Sbjct 757 CAACGGGAGTGGGTTCGGGCCTCCAGTGCGTGTTACCGCACCTTCACCCTGGGCATGACT 698 Query 286 AGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTC 345 ||||||| | ||||||||| | || ||| || |||||| || |||||| |||| Sbjct 697 AGATCACCCGGTTTCGGGTCTACTGCCCGCGACT-ATGCGCCCTTATCAGACTCGGTTTC 639 Query 346 GCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405 || || || ||| | || |||||| || || || ||| || |||| | | |||| | Sbjct 638 CCTTCGCCTCCCCTATAC-GGTTAAGCTTGCCAC-GAACAGTAAGTCGCTGACCCATTAT 581 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465 ||||||| |||| ||||| ||| || |||||| || | ||||| || Sbjct 580 ACAAAAGGTACGCAGTCAC-----TCCT----TGC---GGAGCTCCTACTGCTTGTACGC 533 Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACG 524 ||| |||||||||| |||||||||||||| | | ||||| |||||| ||||||||||||| Sbjct 532 ACACGGTTTCAGGTTCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACG 473 Query 525 GTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGAT 584 ||||| || | ||||||||| || ||||||||| ||| || ||||||| ||| | Sbjct 472 GTACTGGTTCACTATCGGTCGGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATGT 413 Query 585 TCACAC 590 ||| || Sbjct 412 TCAGAC 407 >seq13901 Length=1140 Score = 212 bits (234), Expect = 2e-52 Identities = 244/324 (75%), Gaps = 17/324 (5%) Strand=Plus/Plus Query 267 CTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGC 326 ||||| |||| ||||||||||||||||| | ||||||||| | | || ||| || ||| Sbjct 31 CTTCATCCTGGCCATGGATAGATCACTTGGTTTCGGGTCTACACCCAGCGACTGAT-CGC 89 Query 327 CCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGC 386 |||||||||||||| |||| |||||||| ||| | ||| ||||||| || || || | Sbjct 90 CCTATTCGGACTCGATTTCTCTACGGCTTCCCTATTCGG-TTAACCTTGCCACTGAATGT 148 Query 387 AAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCA 446 || |||| | | |||| | ||||||| |||| |||||| | | || Sbjct 149 AAG-TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCT-TGC------GG------- 193 Query 447 GCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACT 506 ||||| || ||||| |||| ||||||||| |||||||||||||| || ||||| || Sbjct 194 GCTCCTACTTTTTGTAAGCACGCGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCT 253 Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAA 566 |||| |||||||||||||||||| || | ||||||||| | |||||||||| ||| Sbjct 254 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCGATGATGAGTATTTAGCCTTGG 313 Query 567 CGGGTGGTCCCGCCAGATTCACAC 590 || ||||||| ||| ||||| || Sbjct 314 AGGATGGTCCCCCCATATTCAGAC 337 >seq18338 Length=718 Score = 104 bits (114), Expect = 8e-20 Identities = 103/131 (79%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCG-CCAGGGGTACT 506 || |||| |||||| ||| | |||| | ||||| ||||||| || |||| || Sbjct 133 CTTCGACTGATTGTTCGCATCGGATTTCT--TTCTATTGCACTCCCTTTCCTAGGGTTCT 190 Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAA 566 |||||||||||||||||||||||||| |||||||||||| |||| || || |||||| Sbjct 191 TTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTGGGCTTAG 250 Query 567 CGGGTGGTCCC 577 |||||||||| Sbjct 251 AGGGTGGTCCC 261 >seq4764 Length=3866 Score = 104 bits (114), Expect = 8e-20 Identities = 86/104 (83%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 496 CCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTA 555 || ||||| |||||||||| ||||||||||||||||| | ||||||||| ||||||||| Sbjct 1947 CCCGGGGTTCTTTTCACCTCTCCCTCACGGTACTTGTTCACTATCGGTCGTCAAGGAGTA 1888 Query 556 TTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||| || || |||| ||| |||| || | |||||| Sbjct 1887 TTTAGGCTTTGAGGATGATCCC-CCATGTTCAAACAAGATTTCA 1845 Score = 104 bits (114), Expect = 8e-20 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTT 507 |||| || | ||||| |||| | |||||| | ||||||||||| || || ||||| ||| Sbjct 2068 CTCCAACTGTTTGTAAGCACTCGATTTCAGATTCTATTTCACTCTCCTCCCGGGGTTCTT 2009 Query 508 TTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTC 544 ||||||| ||||||||||||||||| | ||||||||| Sbjct 2008 TTCACCTCTCCCTCACGGTACTTGTTCACTATCGGTC 1972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817164448512