Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq7506 426 4e-117 seq16405 408 1e-111 seq13901 370 3e-100 seq4764 120 8e-25 seq18338 102 2e-19 >seq7506 Length=2542 Score = 426 bits (472), Expect = 4e-117 Identities = 349/411 (85%), Gaps = 11/411 (3%) Strand=Plus/Minus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 |||| |||| || ||| |||| |||||| ||| ||||||| |||||||| || |||| Sbjct 779 CACACCTCATCCC-CTACCTTTG-CAACGGGAGTGGGTTCGGGCCTCCAGTGCGT-GTTA 723 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 || ||||| || |||| ||| | |||||| |||||||| |||||||| | ||| ||| Sbjct 722 CCGCACCTT-CACCCTGGGCAT-GACTAGATCACCCGGTTT-CGGGTCTACTGCCC-GCG 667 Query 130 ACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTGC 189 |||| |||||| | ||||||| ||| | || |||||||||||| ||||||||||| || Sbjct 666 ACTATGCGCCCTTATCAGACTCGGTTTCC-CTTCGCCTCCCCTATACGGTTAAGCTT-GC 609 Query 190 CACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGG 249 ||| | | |||||||||||||||||||||||||||||||||||||| | | | | Sbjct 608 CACGAACAGTAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACTC--CTTGCGGAG 551 Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 550 CTCCTACTGCTTGTACGCACACGGTTTCAGGTTCTATTTCACTCCCCTCTCCGGGGTTCT 491 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGG 369 ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 490 TTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGGTCAGTAGTATTTAGCCTTGG 431 Query 370 AGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||||||||||||||| |||||||| ||||| ||||| ||| |||||||| Sbjct 430 AGGATGGTCCCCCCATGTTCAGACAGGGTTTCACGTGCCCCGCCCTACTCG 380 >seq16405 Length=855 Score = 408 bits (452), Expect = 1e-111 Identities = 346/410 (84%), Gaps = 12/410 (3%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || |||| ||||||||| |||| ||||||| ||||||| || ||| Sbjct 780 CCACAGCTCATCCC-CTAA-TTTTTCAACATTAGTGGGTTCGGACCTCCAGGGCGT-GTT 724 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| ||||| || |||| |||| || |||||| | ||||| |||||||| |||||| Sbjct 723 ACCGCACCTT-CATCCTGGCCATGGG-TAGATCACTTGGTTT-CGGGTCTACA-CCCAGC 668 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAGCTTTG 188 |||| | |||||| | |||||| ||| | ||||| ||||||||||||||||| || | Sbjct 667 GACT-GTCGCCCTGTTCGGACTCGATTT-CTCTACGGCTCCCCTATTCGGTTAACCTC-G 611 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGG 248 |||||||| |||||||||||||||||||||||||||||||| ||||||| || ||| || Sbjct 610 CCACTGAATGTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCCCACGAAGAGG 551 Query 249 GCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTC 308 |||| |||| ||||| ||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 550 -CTCCGACTGTTTGTATGCACACGGTTTCAGGATCTATTTCACTCCCCTC-CCGGGGTTC 493 Query 309 TTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTG 368 |||||||||||||||||||||||| |||||||||||||| | | |||||||||||||| Sbjct 492 TTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATTACGAGTATTTAGCCTTG 433 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||||||||||||||| |||||||| ||||||||| ||| |||||| Sbjct 432 GAGGATGGTCCCCCCATGTTCAGACAGGATTTCTCGTGTCCCGCCCTACT 383 >seq13901 Length=1140 Score = 370 bits (410), Expect = 3e-100 Identities = 313/374 (84%), Gaps = 12/374 (3%) Strand=Plus/Plus Query 45 GGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCC 104 ||||||| |||||||| | ||||| ||||| || |||| |||| ||||||||| | Sbjct 1 GGTTCGGACCTCCAGTACCT-GTTACGGCACCTT-CATCCTGGCCAT-GGATAGATCACT 57 Query 105 CGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACG 164 ||||| |||||||| |||||||||| ||||||| | |||||| ||| | ||||| Sbjct 58 TGGTTT-CGGGTCTACA-CCCAGCGACTGATCGCCCTATTCGGACTCGATTT-CTCTACG 114 Query 165 CCTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAG 224 || |||||||||||||| ||| ||||||||| |||||||||||||||||||||||||| Sbjct 115 GCTTCCCTATTCGGTTAACCTT-GCCACTGAATGTAAGTCGCTGACCCATTATACAAAAG 173 Query 225 GTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCT 284 |||||||||||||| | ||||||| ||| ||||| ||| |||||||||||||| Sbjct 174 GTACGCAGTCACCCTT----GCGGGCTCCTACTTTTTGTAAGCACGCGGTTTCAGGATCT 229 Query 285 ATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCG 344 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 ATTTCACTCCCCTC-CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCG 288 Query 345 GTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCG 404 ||| | | |||||||||||||||||||||||||||||||||||||||| || | || Sbjct 289 GTCGATGATGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATTACACG 348 Query 405 TGCTCCGTCCTACT 418 || ||| |||||| Sbjct 349 TGTCCCGCCCTACT 362 >seq4764 Length=3866 Score = 120 bits (132), Expect = 8e-25 Identities = 102/122 (84%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTC-AGTAGTA 358 |||||||||||||| ||| |||||||||||||| |||||||||||||| ||| || |||| Sbjct 1946 CCGGGGTTCTTTTCACCTCTCCCTCACGGTACTTGTTCACTATCGGTC-GTCAAGGAGTA 1888 Query 359 TTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||||| ||| ||||||| | ||||||| |||| |||| |||| | || ||| ||||| Sbjct 1887 TTTAGGCTTTGAGGATGAT-CCCCCATGTTCAAACAAGATTTCACCTGTCCCGCTCTACT 1829 Query 419 CG 420 || Sbjct 1828 CG 1827 Score = 116 bits (128), Expect = 9e-24 Identities = 89/103 (86%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||| |||| ||||| ||| || |||||| |||||||||||| |||| |||||||||| Sbjct 2068 CTCCAACTGTTTGTAAGCACTCGATTTCAGATTCTATTTCACTCTCCTC-CCGGGGTTCT 2010 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCA 352 |||| ||| |||||||||||||| |||||||||||||| |||| Sbjct 2009 TTTCACCTCTCCCTCACGGTACTTGTTCACTATCGGTC-GTCA 1968 >seq18338 Length=718 Score = 102 bits (112), Expect = 2e-19 Identities = 100/128 (78%), Gaps = 2/128 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCG 314 |||| |||| ||||| | |||| |||||| ||||||| | | ||||||||||| Sbjct 138 ACTGATTGTTCGCATCGGATTTCTT--TCTATTGCACTCCCTTTCCTAGGGTTCTTTTCA 195 Query 315 CCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGAT 374 |||||||||||||||||| || | |||||||||| | || | || || | ||| |||| | Sbjct 196 CCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTGGGCTTAGAGGGT 255 Query 375 GGTCCCCC 382 |||||||| Sbjct 256 GGTCCCCC 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241302475392