Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq7506 178 3e-42 seq17855 123 6e-26 seq12715 84.2 5e-14 >seq7506 Length=2542 Score = 178 bits (196), Expect = 3e-42 Identities = 282/399 (71%), Gaps = 17/399 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAAC-TTGAC 59 |||||||| || ||| |||||||||||| ||||||||||| | || || ||| ||| Sbjct 1367 CGACTACGACTTTCGTCCTCGCCTTAGGGGCCGACTCACCCTGCGCCGATTAACGTTGCG 1308 Query 60 CCTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCC 118 | |||| |||||| |||||| |||| || |||||| | || |||||||| | Sbjct 1307 CAAGGAAACCTTGGGCTTTCGGCGTGCGGGGTTTTCACCCGCATTATCGTTACTCATGTC 1248 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | | ||||| || || || | || ||||| | || || Sbjct 1247 AGCATTCGCACTTCCGATACCTCCAGCAGACT-TCTCAATCCACCTTCAACGGCTTACGG 1189 Query 178 GACGCTCCCCTACCCAACCACACAGGTTGCCACAGCTTCGGCGGATAACTTAAGCCCCGC 237 ||||||| ||||| | || || |||||||| | |||| |||||| Sbjct 1188 AACGCTCCTCTACCNACCC-----------CA-AGCTTCGGTTCACTGCTTA-GCCCCGT 1142 Query 238 TACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGC 297 || || || ||| || ||| ||||||||||||||||||| ||||| |||| |||| Sbjct 1141 TAAATCTTCCCCGCAGACCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAAGGGTGGC 1082 Query 298 TGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCAC 357 |||||| ||||||||||||||| ||||| || ||||||| ||| ||||| || Sbjct 1081 TGCTTCTAAGCCAACCTCCTGGCTGTCTGTGCCTTTCCACATGGTTTTCCACTTAGCAGT 1022 Query 358 CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 | || ||| ||||||||| | |||||| ||||||||| Sbjct 1021 GAATTTGGGACCTTAGCTGTGGGTCTGGGTTGTTTCCCT 983 >seq17855 Length=748 Score = 123 bits (136), Expect = 6e-26 Identities = 115/145 (79%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||||| |||||| |||| || ||| || ||||||| Sbjct 598 GCTTCGGTGAATCACTTGAGCCCCGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 654 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 655 GAGCTATTACGCTTTCTTCGAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 714 Query 329 CAACTCCACATCCTTTCCCACTGAG 353 | ||| |||||| ||||| || Sbjct 715 CTCGATCACTTCCTTTTCCACTAAG 739 >seq12715 Length=1303 Score = 84.2 bits (92), Expect = 5e-14 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||||| | || ||| | Sbjct 148 CGACTACGCCTCTCGGCCTCGCCTTAGGGGTCGACTCACCCAGCCCCGATTAACGTTGGA 89 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCG-TCACACGCTACTCATGCCT 119 ||||||||||||| || ||| ||||| || |||||| | || |||||| | | Sbjct 88 CTGGAACCCTTGGTCTTTCAGCGAACGGGTTTTTCACCCGTTTTGTCGTTACTCACGTCA 29 Query 120 GCATTCTCACT 130 |||||| |||| Sbjct 28 GCATTCGCACT 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177317811712