Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq7472 212 1e-52 seq18386 174 3e-41 seq13289 161 2e-37 seq14599 138 2e-30 seq13397 114 2e-23 >seq7472 Length=2552 Score = 212 bits (234), Expect = 1e-52 Identities = 221/290 (76%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||||||| |||||| |||||| | | |||||||||| | ||| Sbjct 704 CCCACGCTTTCGTGCCTCAGTGTCAGTGTTGGTCCAGGTAGCTGCCTTCGCCATGGATGT 763 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||| ||||||| ||||||||| | ||||| | ||| Sbjct 764 TCCTCCTGATCTCTACGCATTTCACTGCTACACCAGGAATTCCGCTACCCTCTACCACAC 823 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || |||| || | ||||| ||||||||||| | ||||||| | |||| Sbjct 824 TCTAGTCGTCCAGTATCCACTGCAGTTCCCAGGTTGAGCCCAGGGCTTTCACAACGGACT 883 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | || ||||| | | |||||| |||| ||| |||| |||||||||| ||| || Sbjct 884 TAAACGACCACCTACGCACGCTTTACGCCCAGTAATTCCGAGTAACGCTTGCACCCTTCG 943 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||||||||||||||||| ||||||||| |||||||| | |||| Sbjct 944 TATTACCGCGGCTGCTGGCACGAAGTTAGCCGGTGCTTATTCTTTGGGTA 993 >seq18386 Length=716 Score = 174 bits (192), Expect = 3e-41 Identities = 210/284 (74%), Gaps = 4/284 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| |||||| |||||| | |||| | |||||||||| ||| | Sbjct 227 CCCATGCTTTCGCACCTCAGTGTCAGTATTAGGCCAGATGGCTGCCTTCGCCATCGGTAT 286 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTC--CGATTGCCTCTCCAGC 118 |||||| || |||||||||||||||||||||| ||||||| | || ||||||| Sbjct 287 TCCTCCAGATCTCTACGCATTTCACCGCTACACCTGGAATTCTACCAT--CCTCTCCCAT 344 Query 119 ACTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGA 178 |||| || |||| || |||||| ||| ||| | | ||||||||| || Sbjct 345 ACTCTAGCTTCCCAGTATCGAATGCAATTCCCAAGTTAAGCTCGGGGATTTCACATCCGA 404 Query 179 CTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTA 238 ||| |||||||| | | |||||| |||| |||||||| ||||||| || ||| Sbjct 405 CTTAAAAAGCCGCCTACGCACGCTTTACGCCCAGTAAATCCGATTAACGCTCGCACCCTC 464 Query 239 CGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 |||||||||||||||||||||| ||||||||| |||||||| Sbjct 465 TGTATTACCGCGGCTGCTGGCACAGAGTTAGCCGGTGCTTATTC 508 >seq13289 Length=1227 Score = 161 bits (178), Expect = 2e-37 Identities = 201/273 (74%), Gaps = 2/273 (1%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | ||||||| | |||| | |||||||||| ||||| Sbjct 348 CCCACGCTTTCGTGCATGAGCGTCAATCTTGACCCAGGGGGCTGCCTTCGCCATCGGTGT 407 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCT-CCAGCA 119 |||||| || |||||||||||||| ||||||| ||||||| ||||| |||| | Sbjct 408 TCCTCCACATCTCTACGCATTTCACTGCTACACGTGGAATTCTACCCCCCTCTGCCAG-A 466 Query 120 CTCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGAC 179 || || |||| || | ||| |||||||||| | |||||| | ||| Sbjct 467 TTCTAGCCTTGCAGTCTCCATCGCAATTCCCAGGTTGAGCCCGGGGATTTCACGACAGAC 526 Query 180 TTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTAC 239 || | |||||| | | | |||||| |||| ||| |||| |||||||||| ||||| Sbjct 527 TTACAAAACCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTAC 586 Query 240 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCG 272 ||||||||||||||||||||||||||||||||| Sbjct 587 GTATTACCGCGGCTGCTGGCACGTAGTTAGCCG 619 Score = 123 bits (136), Expect = 4e-26 Identities = 89/103 (86%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||| | | | |||||| |||| ||| |||| |||||||||| ||||||||||||| Sbjct 623 CCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTACGTATTACC 682 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||||| |||||||| ||||||| Sbjct 683 GCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTCAGGTA 725 >seq14599 Length=1052 Score = 138 bits (152), Expect = 2e-30 Identities = 105/124 (85%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 167 TTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAAC 226 ||||||| | ||| | | ||||||||| || |||||| |||||||| |||||||||| Sbjct 90 TTTCACACCAGACGCGACGAACCGCCTACAAGCTCTTTACGCCCAATAATTCCGGATAAC 149 Query 227 GCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCA 286 |||||| |||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 150 GCTTGCGCCCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGCGCTTATTCGAAA 209 Query 287 GGTA 290 |||| Sbjct 210 GGTA 213 >seq13397 Length=1212 Score = 114 bits (126), Expect = 2e-23 Identities = 87/103 (84%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||| | | | |||||| |||| ||| |||| |||||||||| ||||||||||||| Sbjct 1211 CCGCCTGCGCACGCTTTACGCCCAGTAATTCCGATTAACGCTTGCACCCTACGTATTACC 1152 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||||||||||||||||||| |||||||| | |||| Sbjct 1151 GCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTA 1109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828607601073