Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq21601 176 3e-42 seq9987 167 2e-39 seq12715 136 3e-30 seq7506 113 3e-23 seq11634 82.4 5e-14 >seq21601 Length=573 Score = 176 bits (194), Expect = 3e-42 Identities = 123/140 (88%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| |||| Sbjct 535 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTG 476 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 ||||||||||||||| | |||| ||||||| | |||||| ||| |||||||||||||| Sbjct 475 CTTTCGCATCTGCTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTAT 416 Query 121 CACTACGATTTCCGACCGTA 140 | ||||| |||||||||| Sbjct 415 CGTCACGATGTCCGACCGTA 396 >seq9987 Length=1829 Score = 167 bits (184), Expect = 2e-39 Identities = 121/140 (86%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||| Sbjct 1251 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTA 1192 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | |||| | ||||||| | |||||| ||| |||||||||||||| Sbjct 1191 CTTTCGTACCTGCTCGACTTGTCGGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTAT 1132 Query 121 CACTACGATTTCCGACCGTA 140 | ||||| |||||||||| Sbjct 1131 TAGCACGATGTCCGACCGTA 1112 Score = 104 bits (114), Expect = 2e-20 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||||| ||| Sbjct 1346 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTA 1287 Query 61 CTTTCGCATCTGCTC 75 |||||| | |||||| Sbjct 1286 CTTTCGTACCTGCTC 1272 >seq12715 Length=1303 Score = 136 bits (150), Expect = 3e-30 Identities = 115/141 (82%), Gaps = 8/141 (6%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| Sbjct 1283 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTA 1224 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| | |||||| | |||| | ||||||| | |||| | |||||||| || ||| Sbjct 1223 CTTTCGTACCTGCTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACT-- 1166 Query 121 CACTACG----ATTTCCGACC 137 ||||| |||||||||| Sbjct 1165 --CTACGCGTGATTTCCGACC 1147 >seq7506 Length=2542 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| | ||| Sbjct 2500 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGTCCTA 2441 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCAC 117 |||| | ||||| | || | ||| ||| |||||||| ||| |||| |||||| Sbjct 2440 GTTTCCTACCTGCTTGATCCGTCGATCTTGCAGTCAAGCACGCTTATGCCTTTGCAC 2384 >seq11634 Length=1480 Score = 82.4 bits (90), Expect = 5e-14 Identities = 103/139 (74%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||| | | ||| | | | |||||||||||||| || Sbjct 781 TACCTTTTATCCGTTGAGCGATGCCACGTCCGTACGCCGGCACCGGATCACTATCTCCGA 840 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACT-A 119 |||||| |||||| | || |||| || |||||| | ||| ||| ||| |||| | Sbjct 841 CTTTCGTCCCTGCTCGACCCGTCAGTCTCACAGTCAAGCCCGCTTGTGCGATTACACTCA 900 Query 120 TCACTACGATTTCCGACCG 138 ||| ||||| || |||| Sbjct 901 ACAC-CCGATTGCCAACCG 918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351920922100