Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq21601 201 1e-49 seq9987 178 1e-42 seq7506 159 3e-37 seq12715 141 9e-32 seq11634 111 1e-22 >seq21601 Length=573 Score = 201 bits (222), Expect = 1e-49 Identities = 138/156 (88%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| Sbjct 523 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTGCTTTCGCATCTG 464 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||| ||||||||| |||| |||||||||||||||||| | |||||||||| Sbjct 463 CTCGACTTGTCAGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATCGTCACGATGTC 404 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| | |||| ||||||| ||||||||||| Sbjct 403 CGACCGTAACTAGCGTACCTTCGAACTCCTCCGTTA 368 >seq9987 Length=1829 Score = 178 bits (196), Expect = 1e-42 Identities = 133/156 (85%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||| Sbjct 1239 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTACTTTCGTACCTG 1180 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| ||| ||||||||| |||| |||||||||||||||||| ||||||||| Sbjct 1179 CTCGACTTGTCGGTCTCGCAGTTAAGCACGCTTATGCCATTGCACTATTAGCACGATGTC 1120 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||| |||| ||||||| ||||||||||| Sbjct 1119 CGACCGTACCTAGCGTACCTTCGAACTCCTCCGTTA 1084 Score = 100 bits (110), Expect = 3e-19 Identities = 61/65 (94%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||| Sbjct 1334 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTATGTCCTACTTTCGTACCTG 1275 Query 84 CTCGA 88 ||||| Sbjct 1274 CTCGA 1270 >seq7506 Length=2542 Score = 159 bits (176), Expect = 3e-37 Identities = 129/156 (83%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| | ||| |||| ||||| Sbjct 2488 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGTCCTAGTTTCCTACCTG 2429 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 || || ||||| ||| |||||||||| ||||||||| |||||| | | ||||||| Sbjct 2428 CTTGATCCGTCGATCTTGCAGTCAAGCACGCTTATGCCTTTGCACACAGTGCGCGATGTC 2369 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 |||||| | | ||| ||||||| |||||||||||| Sbjct 2368 CGACCGCGCTGAGCGTACCTTCGAGCTCCTCCGTTA 2333 >seq12715 Length=1303 Score = 141 bits (156), Expect = 9e-32 Identities = 125/156 (80%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 1271 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 1212 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || ||||||||| |||| |||| |||| || ||| | | ||| || Sbjct 1211 CTCGACTTGTGGGTCTCGCAGTTAAGCGCGCTTTTGCCTTTATACTCTACGCGTGATTTC 1152 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||| | | ||| |||||||| ||||||||||| Sbjct 1151 CGACCACGCTGAGCGCACCTTCGTACTCCTCCGTTA 1116 >seq11634 Length=1480 Score = 111 bits (122), Expect = 1e-22 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||| | | ||| | | |||||||||||||| || |||||| |||| Sbjct 793 GTTGAGCGATGCCACGTCCGTACGCCGGCACCGGATCACTATCTCCGACTTTCGTCCCTG 852 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| |||||| |||| |||||||||| |||| ||| ||| |||| | | | |||| | Sbjct 853 CTCGACCCGTCAGTCTCACAGTCAAGCCCGCTTGTGCGATTACACTCAACACCCGATTGC 912 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | |||| | | ||| |||| | | || ||||||||| Sbjct 913 CAACCGGGCTGAGCGGACCATTGAGCGCCTCCGTTA 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473490057756