Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq13289 414 2e-113 seq7472 360 5e-97 seq13397 336 5e-90 seq14599 226 7e-57 seq18386 208 2e-51 seq20252 168 2e-39 >seq13289 Length=1227 Score = 414 bits (458), Expect = 2e-113 Identities = 338/411 (82%), Gaps = 6/411 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| Sbjct 778 CTTTACAACCCGAAGGCCTTCTTCACTCACGCGGCATTGCTGGATCAGGCTTGCGCCCAT 837 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 TGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 897 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 ||||||||| ||||||||||||||||| ||||||||||| |||| ||| ||||| | || Sbjct 898 TGGCTGGTCGTCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGAGCCTTTACCTCACC 957 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 |||||||||||| || | || ||| || |||||||||||||||| |||| Sbjct 958 AACTAGCTAATCAGATATCGGCCGCTCCAGGAGCACAAGGCCCGAAGGTCCCCTGCTTTC 1017 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 || | || |||||||||||||| |||| |||||||||| | | || Sbjct 1018 ATCCTTAGATCGTATGCGGTATTAGCGTAACTTTCGCTACGTTATCCCCCACTCTTGGGT 1077 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 | |||| | | ||||||||||||| ||||||||||||||| |||| ||| ||| Sbjct 1078 ACGTTCCGATATATTACTCACCCGTTCGCCACTCGTCAGCGGAGCA------AGCTCCCT 1131 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||||||||||||||| | || |||||||||||||||||||||| Sbjct 1132 GTTACCGTTCGACTTGCATGTGTAAAGCATGCCGCCAGCGTTCAATCTGAG 1182 >seq7472 Length=2552 Score = 360 bits (398), Expect = 5e-97 Identities = 285/337 (85%), Gaps = 4/337 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| Sbjct 1046 CTTTACAACCCGAAGGCCTTCTTCACCCACGCGGTATGGCTGGATCAGGCTTGCGCCCAT 1105 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1106 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 1165 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||| Sbjct 1166 TGGCTGATCATCCTCTCAGACCAGCTACGGATCGTCGCCTTGGTGGGCCTTTACCCCGCC 1225 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT- 242 ||||||||||||| | | || |||| | || | | ||| |||||| ||||| |||| Sbjct 1226 AACTAGCTAATCCGACATCGGCTCATTCAATCGCGCAAGGTCCGAAGATCCCCTGCTTTC 1285 Query 243 GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAG- 301 | | | || |||||||||||||| |||||| |||||||||| | | ||| Sbjct 1286 ACCCGTAGGTCG-TATGCGGTATTAGCGTAAGTTTCCCTACGTTATCCCCCACGA-CAGA 1343 Query 302 GCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCG 338 | || |||| | ||| ||||||||||||||||||| Sbjct 1344 GTAGATTCCGATGTATTCCTCACCCGTCCGCCACTCG 1380 Score = 114 bits (126), Expect = 3e-23 Identities = 110/135 (81%), Gaps = 6/135 (4%) Strand=Plus/Plus Query 284 GTTATCCCCCTCCATCAG-GCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAG 342 |||||||||| | | ||| | || |||| | ||| ||| ||||||||||||||| || Sbjct 1396 GTTATCCCCCACGA-CAGAGTAGATTCCGATGTATTCCTCCCCCGTCCGCCACTCGCCAC 1454 Query 343 CGA-AGCAGCAAGCTGCTTCCTGT--TACCGTTCGACTTGCATGTGTTAGGCCTGCCGCC 399 | | | |||||||| ||| |||| | |||||||||||||||||||||||||| ||||| Sbjct 1455 CCATAAGAGCAAGCT-CTTACTGTGCTGCCGTTCGACTTGCATGTGTTAGGCCTACCGCC 1513 Query 400 AGCGTTCAATCTGAG 414 |||||||| |||||| Sbjct 1514 AGCGTTCACTCTGAG 1528 >seq13397 Length=1212 Score = 336 bits (372), Expect = 5e-90 Identities = 328/414 (79%), Gaps = 14/414 (3%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||||||||||||| || | ||||||||||||||| |||||||||||||||||| Sbjct 1055 TTTACAACCCGAAGGCCTTCATCCTGCACGCGGCATGGCTGGATCAGGCTTGCGCCCATT 996 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 || ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 995 GTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 936 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 |||||||| ||||||||||||||||| ||||| | || |||| ||| ||||| | ||| Sbjct 935 GGCTGGTCGTCCTCTCAGACCAGCTACAGATCGAAGGCTTGGTGAGCCTTTACCTCACCA 876 Query 185 ACTAGCTAATC--CCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242 |||| |||||| ||||| || ||| | | | ||| | | ||||| |||| Sbjct 875 ACTACCTAATCTGCCATC--GGCCGCTCCATTCGCGCAAGGTCTTGCGATCCCCTGCTTT 818 Query 243 GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTG-GTTATCCCCCTCCATCAG 301 || || ||||||||||||| ||| | || | || |||||||||| | || | Sbjct 817 CATCCGTAGATCGTATGCGGTATTAG-CACAGCTTTCGCTGCGTTATCCCCCACGATTGG 759 Query 302 GCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTC 361 ||| |||| | ||||||||||||| ||||||||| | || ||| | |||| | Sbjct 758 GCACGTTCCGATGTATTACTCACCCGTTCGCCACTCG-CCGC----CAGGA--TTGCTCC 706 Query 362 C-TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | | ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 705 CGCGCTGCCGTTCGACTTGCATGTGTAAGGCATGCCGCCAGCGTTCAATCTGAG 652 >seq14599 Length=1052 Score = 226 bits (250), Expect = 7e-57 Identities = 307/421 (73%), Gaps = 24/421 (6%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||||||||||||| || |||||||| | ||||| ||||| || | |||||| Sbjct 249 TTTACAACCCGAAGGCCTTCATCCCGCACGCGGCGTCGCTGCGTCAGGGTTTCCCCCATT 308 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | ||||||||||||||||||||||||||||||||||||| |||| ||||||| ||| ||| Sbjct 309 GCGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAATGT 368 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| | | |||||||| || |||| ||| |||||||||||||||||||||||| Sbjct 369 GGCCGTCCGCCCTCTCAGGCCGGCTACCCGTCGAAGCCTAGGTGGGCCATTACCCCGCCT 428 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGA---AGGTCCCCCTCTT 241 || |||| || | | ||||| || | | | | | | ||| | Sbjct 429 ACAAGCTGATAGGACGCGACCCCATCCCAT-------GCCACTAAACACTTTCCCAAC-- 479 Query 242 TGGTCTTGCG--ACGTT-----ATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCT 294 | | |||| | ||| || | | |||| | ||||||||| | ||| | Sbjct 480 AAGACATGCGTCAAGTTGGAGCATCCAGCATTACCACCCGTTTCCAAGAGCTATTCTGGA 539 Query 295 CCATCAGGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAA 353 ||| |||| ||| || |||||||||||||| |||||||| ||| | || |||||| Sbjct 540 GCATGGGGCAGGTTGGTCACGCATTACTCACCCGTTCGCCACTC-TCA-CCAACCAGCAA 597 Query 354 GCTGCTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGA 413 |||| | | | | ||||||||||||||||||||| || |||||||||||||| |||| Sbjct 598 GCTGGT--CAGATCCCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCATCCTGA 655 Query 414 G 414 | Sbjct 656 G 656 >seq18386 Length=716 Score = 208 bits (230), Expect = 2e-51 Identities = 136/150 (91%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || |||||||||| ||||||||||||| |||||||||||||||| |||||| || | || Sbjct 567 GTGCTTTACAACCATAAGGCCTTCTTCACACACGCGGCATGGCTGGATCAGGGTTCCCCC 626 Query 61 CATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 |||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 627 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCA 686 Query 121 GTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||| | ||||||||||||||| |||| Sbjct 687 GTGTGGCGGATCATCCTCTCAGACCCGCTA 716 >seq20252 Length=625 Score = 168 bits (186), Expect = 2e-39 Identities = 201/268 (75%), Gaps = 20/268 (7%) Strand=Plus/Plus Query 153 GATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCG 212 ||||| | || ||| ||| ||||||| ||||||| |||||| || ||| ||| Sbjct 5 GATCGCAGGCTTGGTAAGCCTTTACCCCACCAACTACCTAATC-----TGCCATCAGCCG 59 Query 213 AT--AGTGAG----AGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATT 266 | ||| || |||||||||||||||| |||| || || | |||||||||| Sbjct 60 CTCTAGT-AGCACAAGGCCCGAAGGTCCCCTGCTTTCATCCGTAGATCTCATGCGGTATT 118 Query 267 AGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCC 326 ||| || |||| ||| |||||||||| | | ||||| |||| | ||||||||||| Sbjct 119 AGCTACTCTTTCGAGTAGTTATCCCCCACTACTAGGCACGTTCCGATGTATTACTCACCC 178 Query 327 GTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCATGTGT 386 || |||||||||||||| | | | ||| |||||||||||||||||||||||||| Sbjct 179 GTTCGCCACTCGTCAGC--ATCCG-AAG-----ACCTGTTACCGTTCGACTTGCATGTGT 230 Query 387 TAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | || |||||||||||||||||||||| Sbjct 231 AAAGCATGCCGCCAGCGTTCAATCTGAG 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222107076288