Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq13289 363 5e-98 seq7472 318 2e-84 seq13397 293 7e-77 seq14599 288 3e-75 seq18386 232 2e-58 >seq13289 Length=1227 Score = 363 bits (402), Expect = 5e-98 Identities = 288/351 (82%), Gaps = 26/351 (7%) Strand=Plus/Minus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||||||||| |||||| |||| ||||||||||||||||||||| | |||| Sbjct 972 TCTGATTAGCTAGTTGGTGAGGTAAAGGCTCACCAAGGCGACGATCAGTAGCTGGTCTGA 913 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| || | |||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 912 GAGGACGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGT 853 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| ||| ||||||||| ||||||||| |||||| |||||||||| || |||||| Sbjct 852 GGGGAATTTTGGACAATGGGCGCAAGCCTGATCCAGCAATGCCGCGTGAGTGAAGAAGGC 793 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA-------------------------TA 378 |||||||| |||||||||| | ||| |||||| || Sbjct 792 CTTCGGGTTGTAAAGCTCTTTTGTCAGGGAAGAAACGGGATTGGCTAATATCCAGTCCTA 733 Query 379 ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 |||||||||| ||| || |||| |||||||||||||||||||||||||||||||||||| Sbjct 732 ATGACGGTACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 673 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 |||| || ||||||| |||||||||| |||||||||| ||||| ||| || Sbjct 672 AGGGTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGG 623 Score = 129 bits (142), Expect = 2e-27 Identities = 88/98 (90%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| Sbjct 620 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATT 561 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| |||||||||| ||||| ||| ||||| |||||| Sbjct 560 ACT-GGGCGTAAAGCGTGCGCAGGCGGTTTTGTAAGTC 524 >seq7472 Length=2552 Score = 318 bits (352), Expect = 2e-84 Identities = 285/363 (79%), Gaps = 26/363 (7%) Strand=Plus/Minus Query 163 GTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTG 222 ||| |||||||||||||| ||||| ||| ||||||||||||||| ||||| | ||| Sbjct 1241 GTCGGATTAGCTAGTTGGCGGGGTAAAGGCCCACCAAGGCGACGATCCGTAGCTGGTCTG 1182 Query 223 AGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAG 282 ||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1181 AGAGGATGATCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAG 1122 Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||||||| ||||||||| ||||||||| |||| | ||||||| | || ||||| Sbjct 1121 TGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCCATACCGCGTGGGTGAAGAAGG 1062 Query 343 CCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATA------------------------ 378 ||||||||| ||||||| || | | | |||| | Sbjct 1061 CCTTCGGGTTGTAAAGCCCTTTTGTTGGGAAAGAAATCCAGCCGGCTAATACCTGGTTGG 1002 Query 379 -ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| | || |||| |||||||||| |||||||||||||||||||||||| Sbjct 1001 GATGACGGTACCCAAAGAATAAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACG 942 Query 438 TAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAA 497 |||| || ||||||| |||||||||| |||||||||| ||||||||||||| |||| Sbjct 941 AAGGGTGCAAGCGTTACTCGGAATTACT-GGGCGTAAAGCGTGCGTAGGTGGTCGTTTAA 883 Query 498 GTC 500 ||| Sbjct 882 GTC 880 >seq13397 Length=1212 Score = 293 bits (324), Expect = 7e-77 Identities = 273/349 (78%), Gaps = 26/349 (7%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| |||||||| |||||| |||| |||||| | ||||| ||||| | ||||||| Sbjct 865 GATTAGGTAGTTGGTGAGGTAAAGGCTCACCAAGCCTTCGATCTGTAGCTGGTCTGAGAG 924 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | || | |||||| ||| |||||||||||| ||| |||||||||||||||||||||||| Sbjct 925 GACGACCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTGGG 984 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTT 346 |||| ||| ||||||||| ||||||||| |||| | |||||||| |||||||||||| Sbjct 985 GAATTTTGGACAATGGGCGCAAGCCTGATCCAGCCATGCCGCGTGCAGGATGAAGGCCTT 1044 Query 347 CGGGTCGTAAA--GC-TCTGTCC----------------------TCAAGGAAGATAATG 381 ||||| ||||| || | ||| | | ||| | | ||||| Sbjct 1045 CGGGTTGTAAACTGCTTTTGTACGGAACGAAACGGCCTTTTCTAATAAAGAAGGCTAATG 1104 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 ||||||| | || |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1105 ACGGTACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 1164 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 | || ||||||| |||||||||| |||||||||| ||||| ||| ||| Sbjct 1165 GTGCAAGCGTTAATCGGAATTACT-GGGCGTAAAGCGTGCGCAGGCGGT 1212 >seq14599 Length=1052 Score = 288 bits (318), Expect = 3e-75 Identities = 270/341 (79%), Gaps = 12/341 (4%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||| || |||| || || ||||| ||| ||| |||| ||| ||||||| | Sbjct 446 CGCGTCCTATCAGCTTGTAGGCGGGGTAATGGCCCACCTAGGCTTCGACGGGTAGCCGGC 387 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 ||||||||| | |||||||||||| ||||||| |||| ||| ||||||||||||||||| Sbjct 386 CTGAGAGGGCGGACGGCCACATTGGGACTGAGATACGGCCCAGACTCCTACGGGAGGCAG 327 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 |||||||||||||||| ||||||| ||| ||||| ||||| |||||||||| | ||||| Sbjct 326 CAGTGGGGAATATTGCGCAATGGGGGAAACCCTGACGCAGCGACGCCGCGTGCGGGATGA 267 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCA-----AGGAAGAT----AATGACGGTACTT 390 |||||||||||| ||||| | || | | | || ||| | ||| |||| | Sbjct 266 AGGCCTTCGGGTTGTAAACCGCTTT--TGATTGGGAGCAAGCTTTCGGGTGAGTGTACCT 209 Query 391 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 450 || |||| |||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 208 TTCGAATAAGCGCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGCGCAAGCG 149 Query 451 TTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTT 491 ||||||||||||| | |||||||||| | ||||| |||| Sbjct 148 TTATCCGGAATTA-TTGGGCGTAAAGAGCTTGTAGGCGGTT 109 >seq18386 Length=716 Score = 232 bits (256), Expect = 2e-58 Identities = 238/315 (76%), Gaps = 27/315 (9%) Strand=Plus/Minus Query 212 TAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG 271 |||| | |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||| Sbjct 716 TAGCGGGTCTGAGAGGATGATCCGCCACACTGGGACTGAGACACGGCCCAGACTCCTACG 657 Query 272 GGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTG 331 ||||||||||||||||||||||| |||||||| || |||||| |||| | |||||||| Sbjct 656 GGAGGCAGCAGTGGGGAATATTGGACAATGGGGGGAACCCTGATCCAGCCATGCCGCGTG 597 Query 332 AGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA------------TAA 379 | || ||||||||| ||| ||||||| || | | |||| || ||| Sbjct 596 TGTGAAGAAGGCCTTATGGTTGTAAAGCACTTTAAGCGAGGAGGAGGCTACTGAGACTAA 537 Query 380 T--------------GACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGC 425 | |||| |||| | || |||| |||||||||| ||||||||||| Sbjct 536 TACTCTTGGATAGTGGACGTTACTCGCAGAATAAGCACCGGCTAACTCTGTGCCAGCAGC 477 Query 426 CGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAG 485 ||||||||||| |||| || ||||||| |||| ||||| |||||||||| |||||||| Sbjct 476 CGCGGTAATACAGAGGGTGCGAGCGTTAATCGGATTTACT-GGGCGTAAAGCGTGCGTAG 418 Query 486 GTGGTTTCTTAAGTC 500 | || || ||||||| Sbjct 417 GCGGCTTTTTAAGTC 403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497241130112