Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq7472 361 1e-97 seq18386 342 1e-91 seq13289 331 2e-88 seq14599 165 2e-38 seq13397 131 4e-28 seq15497 127 5e-27 >seq7472 Length=2552 Score = 361 bits (400), Expect = 1e-97 Identities = 320/397 (81%), Gaps = 2/397 (1%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||||| |||| || ||||||| || Sbjct 981 AAGCACCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGTGCAAGCGTTACTCG 922 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||||||||||||||| ||||||||||||| ||||||| | ||||||| | || Sbjct 921 GAATTACTGGGCGTAAAGCGTGCGTAGGTGGTCGTTTAAGTCCGTTGTGAAAGCCCTGGG 862 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 ||||||| || ||||| | || |||| | | |||||||| | || || || ||||| Sbjct 861 CTCAACCTGGGAACTGCAGTGGATACTGGACGACTAGAGTGTGGTAGAGGGTAGCGGAAT 802 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 |||| ||||||| |||||||||||||| || |||||||||| | |||||||||| ||| Sbjct 801 TCCTGGTGTAGCAGTGAAATGCGTAGAGATCAGGAGGAACATCCATGGCGAAGGCAGCTA 742 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 741 CCTGGACCAACACTGACACTGAGGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 682 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTC-CGGTG 371 |||||||||||||| ||||||||| ||| | ||| ||| ||| || | | || Sbjct 681 TGGTAGTCCACGCCCTAAACGATGCGAACTGGATGT-TGGGTGCAATTTGGCACGCAGTA 623 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || ||| ||||| ||||| || ||||||||||| Sbjct 622 TCGAAGCTAACGCGTTAAGTTCGCCGCCTGGGGAGTA 586 >seq18386 Length=716 Score = 342 bits (378), Expect = 1e-91 Identities = 314/396 (79%), Gaps = 1/396 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||| |||||||||||||||||||||| |||| || ||||||| || Sbjct 504 AAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCGAGCGTTAATCG 445 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 || ||||||||||||||| ||||||||| || || ||||||| || |||||| | | Sbjct 444 GATTTACTGGGCGTAAAGCGTGCGTAGGCGGCTTTTTAAGTCGGATGTGAAATCCCCGAG 385 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || ||| || | ||| || || |||| |||||||| |||| || || |||| Sbjct 384 CTTAACTTGGGAATTGCATTCGATACTGGGAAGCTAGAGTATGGGAGAGGATGGTAGAAT 325 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 ||| |||||||||||||||||||||| || ||||||| ||| |||||||||| || Sbjct 324 TCCAGGTGTAGCGGTGAAATGCGTAGAGATCTGGAGGAATACCGATGGCGAAGGCAGCCA 265 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||| || ||||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 264 TCTGGCCTAATACTGACACTGAGGTGCGAAAGCATGGGGAGCAAACAGGATTAGATACCC 205 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGC 372 |||||||||| ||||||||||||| |||||| || ||||| | || ||| ||| Sbjct 204 TGGTAGTCCATGCCGTAAACGATGTCTACTAGCCGTTGGGGCCTTTGAG-GCTTTAGTGG 146 Query 373 CGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||||| ||||| ||||||| || ||||||||||| Sbjct 145 CGCAGCTAACGCGATAAGTAGACCGCCTGGGGAGTA 110 >seq13289 Length=1227 Score = 331 bits (366), Expect = 2e-88 Identities = 311/394 (79%), Gaps = 8/394 (2%) Strand=Plus/Minus Query 18 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 77 |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| Sbjct 620 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATT 561 Query 78 ACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAA 137 ||||||||||||| ||||| ||| ||||| |||||| | |||||| | ||||||| Sbjct 560 ACTGGGCGTAAAGCGTGCGCAGGCGGTTTTGTAAGTCTGTCGTGAAATCCCCGGGCTCAA 501 Query 138 CCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGT---GCAGGAGGGGCAAGTGGAATTC 194 || || | ||| | || |||||| ||||||| | |||| |||| || |||||| Sbjct 500 CCTGGGAATTGCGATGGAGACTGCAAGGCTAGAATCTGGCAGAGGGGG---GTAGAATTC 444 Query 195 CTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGC 254 | ||||||| |||||||||||||| || ||||||||||| |||||||||| || | Sbjct 443 CACGTGTAGCAGTGAAATGCGTAGAGATGTGGAGGAACACCGATGGCGAAGGCAGCCCCC 384 Query 255 TGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTG 314 ||| | |||| || | || |||||||||||||||||||||||||||||||||||| Sbjct 383 TGGGTCAAGATTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTG 324 Query 315 GTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTCCGGTGCCG 374 |||||||||||| ||||||||| |||||| ||||||| ||| | ||| || Sbjct 323 GTAGTCCACGCCCTAAACGATGTCTACTAGTTGTCGGG--TTTTAATTAACTTGGTAACG 266 Query 375 CAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 |||| ||||| ||||| || ||||||||||| Sbjct 265 CAGCTAACGCGTGAAGTAGACCGCCTGGGGAGTA 232 Score = 132 bits (146), Expect = 1e-28 Identities = 91/103 (88%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||| || |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 725 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 666 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGG 103 ||||||| |||||||||||||||||||| ||||| ||| || Sbjct 665 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG 623 >seq14599 Length=1052 Score = 165 bits (182), Expect = 2e-38 Identities = 157/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 201 AAGCGCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGCGCAAGCGTTATCCG 142 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||| ||||||||||| | ||||| |||| | ||| | ||||||| | || | Sbjct 141 GAATTATTGGGCGTAAAGAGCTTGTAGGCGGTTCGTCGCGTCTGGTGTGAAAGCCCATCG 82 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 || ||| ||| ||| | || | |||||||||||||| ||||| | |||||| Sbjct 81 CTTAACGGTGGGTTTGCGCCGGGTACGGGCGGGCTAGAGTGCAGTAGGGGAGACTGGAAT 22 Query 193 TCCTAGTGTAGCGGTGAAATG 213 || ||||| ||||| |||| Sbjct 21 TCTCGGTGTAACGGTGGAATG 1 >seq13397 Length=1212 Score = 131 bits (144), Expect = 4e-28 Identities = 84/92 (91%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||||||||||||||||||||||||||||||||| || ||||||| || Sbjct 1121 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCG 1180 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 |||||||||||||||||| ||||| ||| ||| Sbjct 1181 GAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 1212 >seq15497 Length=938 Score = 127 bits (140), Expect = 5e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 ||||| ||||||||| | ||| || | | |||| | |||||| | |||||| ||| Sbjct 1 AGGGGAGAGTGGAATTTCGTGTGGAGGGATCAAATCCTAAGATATACGAAGGAACGCCAA 60 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| |||||| ||| || ||||||| ||||||||||| Sbjct 61 CCGCGAAGGCAGCTCTCTGGGTCCCCACTGACGCTGGGGTGCGAAAGCATGGGGAGCAAA 120 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 |||||| |||||||||||||||||| ||||||| |||||| Sbjct 121 CAGGATCAGATACCCTGGTAGTCCATGCCGTAAGCGATGA 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202911677184