Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq16405 468 9e-130 seq13901 262 7e-68 seq7506 208 1e-51 >seq16405 Length=855 Score = 468 bits (518), Expect = 9e-130 Identities = 295/319 (92%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 88 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 89 AGCTGCGGGGAGCTAGCAAACGAGCTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 148 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 | ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 149 CTTTTAGGTCATTGCATGCTGAATACATAGGCATGCAAAGCGAACGCGGCGAACTGAAAC 208 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 209 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 268 Query 241 GGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCAT 300 ||||||||||| || | |||||| || | |||||||||| |||||||| ||||| Sbjct 269 GGGATGAGCCTGTATGTGATAGTCGATTAGATAGTGGAACAACCTGGAAATGTTGGCCAT 328 Query 301 AGCGGGTGATAGCCCCGTA 319 || ||||||||||||| || Sbjct 329 AGAGGGTGATAGCCCCTTA 347 >seq13901 Length=1140 Score = 262 bits (290), Expect = 7e-68 Identities = 251/319 (79%), Gaps = 3/319 (1%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || |||| ||||||||||||||||||| | |||||| ||||||||| |||| ||||||| Sbjct 713 AGAGCACGTGGTGGATGCCTTGGCGATGATAGGCGACGAAGGACGTGATAGCCTGCGATA 654 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| ||||||| ||||| |||||||||| |||||||||||||||||||||| Sbjct 653 AGCTTCGGGGAGCTGGCAAATTAGCTTTGATCCGGAGATTTCCGAATGGGGAAACCCA-- 596 Query 121 CCTTTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAAC 180 || ||| || ||||| ||||||||||| |||| | |||||| || |||||||||| Sbjct 595 CCGAAAGGT-ATCGCATGATGAATACATAGTCATGCGAGGCGAACCGGGTGAACTGAAAC 537 Query 181 ATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAAT 240 |||| ||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| Sbjct 536 ATCTCAGTAGCTCGAGGAAAAGACATCAACCGAGATTCCGAAAGTAGTGGCGAGCGAAAT 477 Query 241 GGGATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCAT 300 ||| |||||| | ||||| || || ||| |||||| ||||| Sbjct 476 CGGAAGAGCCTGCTAGTGATAGCACAAGACTTATCAGAACGGCTTGGAAAGGCCGGCCAT 417 Query 301 AGCGGGTGATAGCCCCGTA 319 || |||||| ||||||||| Sbjct 416 AGTGGGTGACAGCCCCGTA 398 >seq7506 Length=2542 Score = 208 bits (230), Expect = 1e-51 Identities = 244/325 (75%), Gaps = 15/325 (5%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||||| |||||||||||||||| | | |||||||||||||||| | ||| ||||| | Sbjct 39 AGCGCACACGGTGGATGCCTTGGCGGTCAGAGGCGATGAAGGACGTGGCAGCCTGCGAAA 98 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 || ||||||| |||| || |||||||||| || ||||||||||||||||| | Sbjct 99 AGTATCGGGGAGCTGGCAA-CAAGCTTTGATCCGGTAATGTCCGAATGGGGAAACCCACC 157 Query 121 CCTTTG-GGTCATTGCATGC--TGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGA 177 | ||| || || | ||| ||||||||||| | |||||||| || ||||||| Sbjct 158 CGCTTGCGGGTAT--CCTGCAGTGAATACATAGCTGCTGGAAGCGAACCTGGTGAACTGA 215 Query 178 AACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGA 237 || ||||||||| | ||||||||||||||||||||||||| |||||| | ||||||| Sbjct 216 AATATCTAAGTAACCAGAGGAAAAGAAATCAACCGAGATTCCGTAAGTAGCGACGAGCGA 275 Query 238 AATGGGATGAGCCTTTACGAGATAGTTGAATTG---ATAGTGGAATCCTCTGGAAATAGG 294 | ||| |||| ||| || ||| ||| ||| || ||||||||| || Sbjct 276 ACGCGGACTAGCCCTTA------AGCTGATTTGGTTCTAGGAAAACGCTCTGGAAAGAGC 329 Query 295 AGCCATAGCGGGTGATAGCCCCGTA 319 ||||||| ||||||||||| ||| Sbjct 330 GGCCATAGAAGGTGATAGCCCTGTA 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918179923808