Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq4269 329 1e-87 seq1345 268 3e-69 seq3151 181 3e-43 seq4425 168 2e-39 seq3704 161 3e-37 seq596 156 1e-35 seq160 152 2e-34 seq13514 118 3e-24 seq1173 111 5e-22 seq6315 96.9 1e-17 seq11634 75.2 4e-11 >seq4269 Length=4205 Score = 329 bits (364), Expect = 1e-87 Identities = 212/232 (91%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 234 CGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCT 293 |||||||||| ||| || ||||||| | || | |||| | | ||||||||||||||| Sbjct 2951 CGGCTCCCACCTATACTGCACCTCTTATATCGCCTTACAATGCCAGACTAGAGTCAAGCT 2892 Query 294 CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 353 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 2891 CAACAGGGTCTTCTTTCCCCGCTAGTGTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGC 2832 Query 354 TAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 413 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2831 TAGATAGTAGATAGGGACAGAGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAG 2772 Query 414 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2771 ATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 2720 Score = 242 bits (268), Expect = 1e-61 Identities = 139/142 (98%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 392 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2718 ATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTT 2659 Query 452 ACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGG 511 |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 2658 ACTCCCGCCGTTTACCCGCGCTTGCTTGAATTTCTTCACGTTGACATTCAGAGCACTGGG 2599 Query 512 CAGAAATCACATTGCGTCAACA 533 |||||||||||||| ||||||| Sbjct 2598 CAGAAATCACATTGTGTCAACA 2577 >seq1345 Length=8665 Score = 268 bits (296), Expect = 3e-69 Identities = 313/425 (74%), Gaps = 41/425 (10%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| ||| |||| || ||| |||| ||||||||||||||||||| | Sbjct 8478 CTTTTACTCTACGAGAGGTTTCCGTCCTCTCTGAGCTAGCCTTAGGACACCTGCGTTACG 8419 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| |||||||| ||||||||| |||||||||| ||||||| |||| || || || Sbjct 8418 TTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCTTCGGTGCGAGTC 8359 Query 127 GGC----CCGCGAAGGACCTTAACGCCAG--AAAATGGTCGGTGAAGAC----------- 169 | | ||| || ||||| | |||| ||| || || Sbjct 8358 GTTAAATCACCGAGTGAT-TTAACTTAAATCAAAAATTTCGA--AATACATATAATATTT 8302 Query 170 CAGTTC-CGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACT----- 223 || ||| || || | || |||||||| || |||| | |||||||||||||||| Sbjct 8301 CAATTCTCGTTTTACCGAATAAGTAAAGAATCGATGAAAGTAGTGGTATTTCACTGTTGG 8242 Query 224 ---------------TGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTT 268 | | ||| ||||||||||| |||||||||||| | | || Sbjct 8241 TATTTGTATAATAAATACAAAAAAAAACCTCCCACTTATGCTACACCTCTCATGACTCTT 8182 Query 269 CACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAG 328 |||| |||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 8181 CACAGAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGTGTTTGCCAAG 8122 Query 329 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 388 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8121 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 8062 Query 389 TCCAT 393 ||||| Sbjct 8061 TCCAT 8057 >seq3151 Length=5323 Score = 181 bits (200), Expect = 3e-43 Identities = 153/184 (83%), Gaps = 18/184 (10%) Strand=Plus/Plus Query 298 AGGGT--CTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||| ||||||||||| ||| || ||||||| |||||| | |||| || Sbjct 333 AGGGTGACTTCTTTCCCCTCTGTTT--GCCAAGCGCGTTCC----------GCTTCGTTA 380 Query 356 GATAGTAGATA-GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 | |||||| || |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 381 GGTAGTAGGTATGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACGAATTAGA 440 Query 415 TGACGAGGCA-TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCT 473 |||| ||||| || |||||||||| ||||||||||||||||||| |||||| ||| ||| Sbjct 441 TGACAAGGCACTTGGGCTACCTTA--AGAGTCATAGTTACTCCCGTCGTTTATCCGTGCT 498 Query 474 TGGT 477 |||| Sbjct 499 TGGT 502 >seq4425 Length=4098 Score = 168 bits (186), Expect = 2e-39 Identities = 147/182 (81%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 290 AGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 ||||||||| |||||||| ||||| ||| | |||||||||||| ||||| |||| || Sbjct 3175 AGCTCAACAAGGTCTTCTCTCCCCACTGTATTTGCCAAGCCCGTTTTCTTGGGTGTGCTT 3116 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 | || | || || ||| ||| ||||||||||||||||||| |||||| || ||| || Sbjct 3115 TTGCCAAGTATTAAGTAGAGACCGTGGGAATCTCGTTAATCCCTTCATGTGCATCATGAA 3056 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 ||| | || |||||||||||||||| || || || |||||||||||| |||||||||| Sbjct 3055 TTAAACGAGGAGGCATTTGGCTACCCTA--AGCGTTATAGTTACTCCCATCGTTTACCCG 2998 Query 470 CG 471 || Sbjct 2997 CG 2996 >seq3704 Length=4711 Score = 161 bits (178), Expect = 3e-37 Identities = 108/118 (92%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 339 TGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATG 398 ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| || Sbjct 1069 TGGCTGTGGTTTCGCTAGATAATAGATAGGGACAGTGGAAATCTCGTTAATCCATTCCTG 1128 Query 399 CGCGTCACTAATTAGATGACGAGGCATTTGGCTACC-TTAAG-AGAGTCATAGTTACT 454 | |||||| ||||| ||||||||||||||||||||| ||||| |||||| | |||||| Sbjct 1129 CACGTCACGAATTAAATGACGAGGCATTTGGCTACCTTTAAGAAGAGTCGTGGTTACT 1186 >seq596 Length=12563 Score = 156 bits (172), Expect = 1e-35 Identities = 168/218 (77%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 289 AAGCT-CAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 ||||| ||||||| | |||||||| ||||| | |||||| ||||||||| ||| || Sbjct 2762 AAGCTTCAACAGGATTTTCTTTCCTCGCTGTATTTGCCAAGTTCGTTCCCTTAGCTATGA 2703 Query 348 TTTCGCTAGATAGTAGATAGGG-ACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 |||||||||||||||||| ||| || |||| ||||| | || | |||| || ||| Sbjct 2702 TTTCGCTAGATAGTAGATTGGGGACTGTGGAAATCTTATCAAAC-ATTCGTGT---TCAT 2647 Query 407 TAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTAC 466 |||||||||| |||||||||| ||||||||||| |||| ||||||| | | |||||| Sbjct 2646 GAATTAGATGATAAGGCATTTGGTTACCTTAAGAGTGTCAAAGTTACTTTCTCTGTTTAC 2587 Query 467 CCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAG 504 | | |||||||| | ||| ||| ||||| |||| Sbjct 2586 CTCTGTCCGGTTGAATCCCATCATTTTTACATTTAGAG 2549 >seq160 Length=19552 Score = 152 bits (168), Expect = 2e-34 Identities = 115/133 (86%), Gaps = 3/133 (2%) Strand=Plus/Minus Query 282 TAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGG 341 || |||||||||||| || |||||||| | | | || || ||||||||| ||||||| | Sbjct 4994 TAAAGTCAAGCTCAAAAGAGTCTTCTTCCTCAGTTGTTT--GCCAAGCCC-TTCCCTTAG 4938 Query 342 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 401 ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| || Sbjct 4937 CTGTGGTTTCGTTAGATAGTAGATAGGGATAGTGGAAATCTCGTTAATCCATTCATGTGC 4878 Query 402 GTCACTAATTAGA 414 ||||| || |||| Sbjct 4877 GTCACGAAATAGA 4865 >seq13514 Length=1196 Score = 118 bits (130), Expect = 3e-24 Identities = 85/99 (86%), Gaps = 8/99 (8%) Strand=Plus/Plus Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||||||||||| | ||||||||| | |||||||||||||| Sbjct 663 ACAGGGTCTTCTTTCCCCGCTGTGTTTGCCAAGCCCTT--------CTGTGGTTTCGCTA 714 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 |||||||||||||||||||||||||||| |||||||||| Sbjct 715 GATAGTAGATAGGGACAGTGGGAATCTCATTAATCCATT 753 >seq1173 Length=9216 Score = 111 bits (122), Expect = 5e-22 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 323 GCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCT 382 |||||||| ||||||||| |||||||||||| |||||| |||||||||||| |||||| Sbjct 8645 GCCAAGCCTGTTCCCTTGATTGTGGTTTCGCTTCATAGTAAATAGGGACAGTGAGAATCT 8586 Query 383 CGTTAATCCATTCATGCGC 401 ||||||||||||||||||| Sbjct 8585 CGTTAATCCATTCATGCGC 8567 >seq6315 Length=3029 Score = 96.9 bits (106), Expect = 1e-17 Identities = 161/228 (71%), Gaps = 21/228 (9%) Strand=Plus/Plus Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 |||||| | | ||||||| |||||| | | ||| ||||| ||| | ||| || | Sbjct 840 TCAACAAGATTTTCTTTCTCCGCTGTGTTTGGCAAA---GTTCCTTTGACCGTGTTT--G 894 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 |||||||||||| | ||||||||||||| ||||||||||||| ||| || |||| ||||| Sbjct 895 CTAGATAGTAGAGAAGGACAGTGGGAATTTCGTTAATCCATTTATG-GCATCACGAATTA 953 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 | || || | | | ||||| ||| | || | ||| | |||| Sbjct 954 AGTAACAAGCGAACT-GTTACCTGAAG-CATTC-CATTTATTACCGC------------T 998 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 || |||| |||||||| ||| |||| |||||| |||||| |||||| Sbjct 999 TTCATTGATTTTCTTCATTTTTGCATTTAGAGCATTGGGCAAAAATCA 1046 >seq11634 Length=1480 Score = 75.2 bits (82), Expect = 4e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||||||| | |||||| |||||| ||| ||| | ||| ||| ||| |||| Sbjct 1226 GACAGTGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTC 1285 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || || |||||||| |||||||||||| | |||| Sbjct 1286 GCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACCGGGGCTT 1331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634808157024