Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20timori_20[genbank_20GCA_5F000950975.1_202014-09-24] 23,963 sequences; 64,930,714 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq15427 410 4e-112 seq15631 251 2e-64 seq19612 203 1e-49 seq18480 190 6e-46 seq10520 113 1e-22 >seq15427 Length=945 Score = 410 bits (454), Expect = 4e-112 Identities = 326/384 (85%), Gaps = 12/384 (3%) Strand=Plus/Minus Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189 |||||||||||||||||||||||||| |||| |||||| ||||||||||||| |||| Sbjct 945 CCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTAGGCCTCTAT 886 Query 190 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTC-AAGGCCA 248 |||||||||||||||||||||||||||||||||||||| | |||||||| | | |||| Sbjct 885 CCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCACGATGGCCG 826 Query 249 TGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG----AAG--GGCGTTGGTTT 302 |||||| ||| |||||| |||||||| || |||| || ||| |||| | | Sbjct 825 TGCGATCCGTCGAGTTATCATGAATCATCA--GAGCAACGGGCAAAGCCCGCGTCGACCT 768 Query 303 TTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGA 361 |||||||||||||| || ||||||| ||||||||||||| ||| |||||||||||||| Sbjct 767 TTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGGTGCACGTATTAGCTCTAGA 708 Query 362 ATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAG 421 ||||| |||||||||| |||| || ||| |||||| |||| ||||||||||||||||| Sbjct 707 ATTACTACGGTTATCCGAGTAGCAA-ATACCATCAAACAAACTATAACTGATTTAATGAG 649 Query 422 CCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCTTAATCTTTG 480 |||||||||||||||| || | ||| | | ||||||| ||||||||||||||||||||| Sbjct 648 CCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTG 589 Query 481 AGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||| Sbjct 588 AGACAAGCATATGACTACTGGCAG 565 >seq15631 Length=925 Score = 251 bits (278), Expect = 2e-64 Identities = 209/254 (82%), Gaps = 1/254 (0%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||| |||||| || || | | |||| ||| | || || ||||| | |||||||||| Sbjct 652 GTACCCATTCCGATAACCGGCCTCAAA-GAGAACGGTCTCGTTATTTTTCGTCACTACCT 710 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | | | || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 711 CCTCATTCTGAGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 770 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||| ||||||||| |||| |||||||||||| ||||||||| Sbjct 771 TCTCAGGCTCCCTCTCCGGAGTCGAACCCTTATTCTCCGTTACCCGTTACAACCATGGTA 830 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||| || ||||||||||||||||||| |||||| | |||| || | ||||||| Sbjct 831 GGCACATAAACTACCATCGAAAGTTGATAAGGCAGACACTTGATAGATACGTCGCCGGTA 890 Query 241 CAAGGCCATGCGAT 254 |||| ||||||||| Sbjct 891 CAAGACCATGCGAT 904 >seq19612 Length=654 Score = 203 bits (224), Expect = 1e-49 Identities = 127/137 (93%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 641 ATTGGGTAATTTTCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 582 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 |||||||| |||||||||||||| |||||| |||| |||||||||||||| || ||| Sbjct 581 TCTCCGGAGTCGAACCCTAATTCTCCGTTATCCGTCACAACCATGGTAGGCCAATACCCT 522 Query 193 ACCATCGAAAGTTGATA 209 ||||||||||||||||| Sbjct 521 ACCATCGAAAGTTGATA 505 Score = 84.2 bits (92), Expect = 7e-14 Identities = 112/151 (74%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT-ATCAAATAA 401 ||| ||||||||||| ||||||||| | |||||||| | ||| || | | | || Sbjct 396 AGCGTGTATTAGCTCAAGAATTACCTCAGTTATCCA---ACTAAAATATTTACCGTGTAG 340 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 | ||| ||| | |||||||| | ||| |||||| ||| || | || |||||| || Sbjct 339 TCTATAGCTGTTATAATGAGCTTTCCGCGGTTTCA-TGTTTAAAACA-TTGTACTTACAC 282 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATAT 492 |||||||||||||||||| | | ||||| || Sbjct 281 ATGCATGGCTTAATCTTTAAAATAAGCACAT 251 >seq18480 Length=711 Score = 190 bits (210), Expect = 6e-46 Identities = 180/230 (78%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 26 AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| | || || ||||| | |||||||||||| | | || ||||| Sbjct 240 AAAGAGAACAGTCTCGTTATTTTTCGTCACTACCTCCTCATTCTAAGAGTGGGT------ 187 Query 86 CGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||| Sbjct 186 ---GCCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAGGTTCCCTCTCCGGAGTCGA 130 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCAT-GGTAGGCCACTATCCTACCATCGAAAGT 204 ||||| |||| |||||||||||| ||||| ||||||| || |||||||||||||| Sbjct 129 ACCCTTATTCTCCGTTACCCGTTACAACCATGGGTAGGCACATAAACTACCATCGAAAGT 70 Query 205 TGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGAT 254 ||||| |||||| | |||| || | ||||||| |||| ||||||||| Sbjct 69 TGATAAGGCAGACACTTGATAGATACGTCGCCGGTACAAGACCATGCGAT 20 >seq10520 Length=1709 Score = 113 bits (124), Expect = 1e-22 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 94 CTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAAT 153 ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| || Sbjct 30 CTGCCTTACTTGGATGTGGTAGCCGTTTCTCAGGCTCTCTCTTCGGAATCGAACCCTTAT 89 Query 154 TCCCCGTTACCCGTTGATACCATGGTAGGC 183 || ||| ||||||| |||| ||||||| Sbjct 90 TCTCCGCAACCCGTTACAACCACGGTAGGC 119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510038062848