Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq32051 150 3e-34 seq14733 78.8 2e-12 seq11301 77.0 6e-12 >seq32051 Length=19224 Score = 150 bits (166), Expect = 3e-34 Identities = 156/201 (78%), Gaps = 5/201 (2%) Strand=Plus/Plus Query 36 AGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT 95 ||||| |||||||||| |||||||| |||||||| ||||||||||| ||||||||||| Sbjct 12981 AGTAGAGTAAAACTAATCTGTCTCACGACGGTCTCAACCCAGCTCATTATCCCTATTAGT 13040 Query 96 GGGTGAACAATCCAACGCTTACCGA-ATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 |||| | || ||||||||| | |||| | ||| ||||||||| ||||| ||| Sbjct 13041 AGGTGTATAACCCAACGCTTGGTAATTTTCTTC-TCGTAATGATAGGATGAGCCAACA-- 13097 Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||| || || ||| ||| || |||| ||| |||| || || ||||| | ||||||||| Sbjct 13098 -AAGAATTAACAAGTAACATCACTATTAACACTTGACTACCTCAAGCTATTTATCCCTGC 13156 Query 215 GGTAACTTTTCTGGCACCTCT 235 || ||||||| | ||| ||| Sbjct 13157 TGTTACTTTTCAGACACTTCT 13177 Score = 109 bits (120), Expect = 9e-22 Identities = 129/174 (74%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||| ||||||||| ||| ||||||||||||||||||||| ||||| Sbjct 195 GTCAACAGTAGAGTAAAACTAT------TCACTACGGTCTAAACCCAGCTCACGATCCCT 248 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||| | ||||||| ||||||||| | |||| ||| || || ||||| Sbjct 249 ATTAGTAGATGAACAACCCAACGCTTGGACAGTTCTTCTT-TTTAATTTATCTCGAGCCT 307 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 | |||||| | ||||| ||||| ||||| ||| ||||||| | ||||| || Sbjct 308 ATCTCGAAGAAGCAAAATGCAACTTCGCTGTGAGTACTTGGCTACTACAAGTCA 361 Score = 105 bits (116), Expect = 1e-20 Identities = 75/86 (87%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| || ||| |||||||||| |||||||| |||||||| ||||||||||| |||| || Sbjct 8355 GTCAACAATAGAGTAAAACTAATCTGTCTCACGACGGTCTTAACCCAGCTCATGTTCACT 8414 Query 90 ATTAGTGGGTGAACAATCCAACGCTT 115 |||||| | ||||||| ||||||||| Sbjct 8415 ATTAGTAGATGAACAACCCAACGCTT 8440 Score = 87.8 bits (96), Expect = 3e-15 Identities = 81/102 (79%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||||||| ||||| ||| ||| || || ||| ||| || ||||||||||||| || Sbjct 13346 ATGATAGGATGAGCCAACA---AAGAATTAACAAGTAACATCACTATGAACGCTTGACTA 13402 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 || ||||| | |||||||||| || ||||| | | ||||||| Sbjct 13403 CCTCAAGCTATTTATCCCTGTTGTTACTTTGCAGACACCTCT 13444 Score = 86.0 bits (94), Expect = 1e-14 Identities = 85/108 (79%), Gaps = 3/108 (3%) Strand=Plus/Plus Query 128 TTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT 187 |||| ||||||||| ||||| ||| ||| || || ||| ||| || ||||||||||| Sbjct 18209 TTCGTAATGATAGGATGAGCCAACA--GAAAAAT-AACAAGTAACATCACTATGAACGCT 18265 Query 188 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCT 235 || || || ||||| | ||||||||| || ||||||| | ||||||| Sbjct 18266 TGACTACCTCAAGCAATTTATCCCTGCTGTTACTTTTCAGACACCTCT 18313 Score = 75.2 bits (82), Expect = 2e-11 Identities = 121/175 (69%), Gaps = 17/175 (10%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||| | ||||||||||||| || |||| | | ||||||| ||||| || Sbjct 763 GTCAACAGTAGAGAAAAACTAACCTGTTTC---TCGGTTTGATTCCAGCTCGCGTTCTCT 819 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCT-TCGGTATGATAGGAAGAGCC 148 ||| || ||| || ||||||||| | ||||||| || ||||| Sbjct 820 ATTTGTATGTGTGAAACCCAACGCTTGGACAGTTCTGCTCTC-------------GAGCC 866 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCA 203 | |||||| | ||||| ||||| ||||| ||| ||||||| | ||||| || Sbjct 867 CATCTCGAAGAAGCAAAATGCAACCTCGCTGTGAGTACTTGGCTACTACAAGTCA 921 >seq14733 Length=4620 Score = 78.8 bits (86), Expect = 2e-12 Identities = 128/179 (72%), Gaps = 14/179 (8%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 |||||||| |||| ||| |||||||||| ||| || ||| |||| ||||| ||||| Sbjct 4452 CTGTCTCACGACGTTCTGAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACC 4393 Query 113 CTT---ACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAA--AA 167 ||| ||| | | | || | | ||| || ||||||||||||| | |||| | Sbjct 4392 CTTGGGACCAACTCCAGCCCCAGGATGC---GACGAGCCGACATCGAGGTGCCAAACCAT 4336 Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACA--AGCCAGTTATCCCTGTGGTAACTTTT 224 || ||||| |||| || ||||| || | | |||| |||||||| | |||| ||||| Sbjct 4335 GC--CGTCGATATGGACTCTTGG--GCAAGATCAGCCTGTTATCCCCGAGGTACCTTTT 4281 >seq11301 Length=108 Score = 77.0 bits (84), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 6/112 (5%) Strand=Plus/Minus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT--ACCGAATTCTGCT 128 ||||||||||| |||| |||||||| | ||||||| ||||||||| | | |||| | Sbjct 108 AACCCAGCTCATGTTCACTATTAGTAGATGAACAACCCAACGCTTGGATAGTTTTCT-TT 50 Query 129 TCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||| ||||||||| ||||| ||| ||| || || ||| ||| || |||| Sbjct 49 TCGTAATGATAGGATGAGCCAACA---AAGAATTAACAAGTAACATCACTAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854113271904