Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq20001 161 2e-37 seq14733 93.3 9e-17 >seq20001 Length=1809 Score = 161 bits (178), Expect = 2e-37 Identities = 110/124 (89%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | | Sbjct 1809 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGG 1750 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 ||| |||||||| || | ||| |||||||||||||||||||||||||||||||| ||| Sbjct 1749 TCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCACCAACAAGC 1690 Query 190 TAAT 193 | || Sbjct 1689 TGAT 1686 >seq14733 Length=4620 Score = 93.3 bits (102), Expect = 9e-17 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| |||||| || || | | | |||||||| ||| ||| ||||||||| |||||| Sbjct 83 TTTACAACCCGAAGGCCGTCATCC-CTCACGCGGCGTTG-CTGCATCAGGCTTGCGCCCA 26 Query 62 TTGTCCAATATTCCCCACTGCTGCC 86 |||| |||||||||||||||||||| Sbjct 25 TTGTGCAATATTCCCCACTGCTGCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071640247520