Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq14733 753 0.0 >seq14733 Length=4620 Score = 753 bits (834), Expect = 0.0 Identities = 528/599 (88%), Gaps = 12/599 (2%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||| | |||||| |||||| ||||||||| || |||||||||||| |||||||||| Sbjct 2705 TCGACTATGAAGCTTA-TCCCCCACAGTCTCACTGCTGCGCTCTCACTTACCGGCATTCG 2647 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCC 119 |||||| | ||| || |||| ||||| || ||| | | ||||||||| ||||||||||| Sbjct 2646 GAGTTTAGCTGACGTCAGTAACCTTGTAGGGCCCATCGGCCATCCAGTAGCTCTACCTCC 2587 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 || ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 2586 GGCAAGAAACACGCAACGCTGCACCTAAATGCATTTCGGAGAGAACCAGCTATCACGAAG 2527 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2526 TTTGATTGGCCTTTCACCCCTATCCACAGCTCATCCCCTCAGTTTTCAACCTAAGTGGGT 2467 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||| Sbjct 2466 TCGGTCCTCCACGACGTCTTACCGTCGCTTCAACCTGGCCATGGATAGATCACTTCGCTT 2407 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 ||||||| | | ||| ||| | |||||||||| ||||||||||||||||||||||||| Sbjct 2406 CGGGTCTAGGACATGCGACTGAACCGCCCTATTCAGACTCGCTTTCGCTACGGCTACCCC 2347 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 ||||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||| Sbjct 2346 ACACGGGTTAACCTCGCCACATATCGCTAACTCGCAGGCTCATTCTTCAAAAGGCACGCT 2287 Query 420 GTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGT 479 ||||| ||||| |||| ||||| |||||||||| ||| | |||||||||| Sbjct 2286 GTCAC-----ACCTACAAGG-----GTGCTCCAACGGATTGTAAGCAAACGGTTTCAGGT 2237 Query 480 ACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTAT 539 ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||| Sbjct 2236 ACTATTTCACTCCCCTCCCGGGGTACTTTTCACCTTTCCCTCACGGTACTAGTCCGCTAT 2177 Query 540 CGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTC 598 |||||| | |||||||||||||||| | |||||||| | |||||||||||| ||||| Sbjct 2176 CGGTCATCTGGGAGTATTTAGGCTTATCAGGTGGTCCTGACAGATTCACACGGGATTTC 2118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816990031616