Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq14733 230 6e-58 >seq14733 Length=4620 Score = 230 bits (254), Expect = 6e-58 Identities = 312/418 (75%), Gaps = 13/418 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || || | |||| |||| ||| |||||||||||||| | Sbjct 2508 CCTATCCACAGCTCATCCC-CTCAGTTTT-CAACCTAAGTGGGTTCGGTCCTCCACGACG 2451 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | ||||| ||| ||||||| |||| ||||||||| | | || |||||||| | Sbjct 2450 TC-TTACCGTCGCTT-CAACCTGGCCAT-GGATAGATCACTTCGCTT-CGGGTCTAGGAC 2395 Query 124 CCAGCGACTAGAC-GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 |||||| || |||||| | ||||||||||| ||||||| || ||| | ||| | | Sbjct 2394 AT-GCGACTGAACCGCCCTATTCAGACTCGCTTT-CGCTACGGCTACCCCACACGGGTTA 2337 Query 183 GCTTTGCCACTGAAAA-TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCAC-CCAA 240 | | ||||| | ||| |||| | | |||| | ||||||| |||| ||||| || | Sbjct 2336 ACCTCGCCACATATCGCTAACTCGCAGGCTCATTCTTCAAAAGGCACGCTGTCACACCTA 2277 Query 241 CAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTC 300 ||| | | ||||| || | ||||| ||| ||||||||||| |||||||||||||||| | Sbjct 2276 CAAGG-GTGCTCCAACGGATTGTAAGCAAACGGTTTCAGGTACTATTTCACTCCCCTC-C 2219 Query 301 CGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATT 360 |||||| |||||| ||||||||||||||||||||| | |||||||||| | |||||| Sbjct 2218 CGGGGTACTTTTCACCTTTCCCTCACGGTACTAGTCCGCTATCGGTCATCTGGGAGTATT 2159 Query 361 TAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 ||| ||| | |||||| || ||||| || ||||||| || |||| ||||| Sbjct 2158 TAGGCTTATCAGGTGGTCCTGACAGATTCACACGGGATTTCTCGGGCCCCGTGCTACT 2101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241183331456