Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq20001 224 2e-56 >seq20001 Length=1809 Score = 224 bits (248), Expect = 2e-56 Identities = 227/291 (78%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 36 TATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGT 95 ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1809 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGG 1750 Query 96 TCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTATTATCTCACCAACTACC 155 ||| |||||||| ||||||||| |||||| ||||||| || |||| ||||||||| | | Sbjct 1749 TCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCACCAACAAGC 1690 Query 156 TAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAAAGA-ATGATGCCATCC 214 | || ||||||||| ||||| | |||||||||||| | | | | |||| | Sbjct 1689 TGATAGGCCGCGAGTCCATCCCGAACCGATAAATCTTTCCACCCACACACCATGCGGTGA 1630 Query 215 TCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGT 274 | |||| ||| | ||||||| |||||||| |||| ||| | ||||||| Sbjct 1629 TGGGACA-TATCCAGTATTAGACGCCGTTTCCAGCGCTTATCCCAGAGTTCGGGGCAGGT 1571 Query 275 TGCTCACGTGTTACTCACCCGTCCGCCACTAAGCTATATATCCAGCAAGCT 325 | |||||||||||||||||||| ||||||| || | | |||||||||| Sbjct 1570 TACTCACGTGTTACTCACCCGTTCGCCACT---CT-TCCACCCAGCAAGCT 1524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998064946944