Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq14733 372 7e-101 seq18331 77.0 8e-12 >seq14733 Length=4620 Score = 372 bits (412), Expect = 7e-101 Identities = 337/429 (79%), Gaps = 30/429 (7%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||| Sbjct 3130 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGCAGATTAGCTTGACC 3071 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 ||||||||||||| ||| ||||||| ||| |||||||| ||||||||||||||| Sbjct 3070 CTGGAACCCTTGGTCTTCCGGAGGACGGGTTTCTCACCCGTCTTTCGCTACTCATGCCTG 3011 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGAC 180 |||||||||||| | ||||| || |||| | || ||||||| ||||||| Sbjct 3010 CATTCTCACTCGTGTGGCATCCACGACTGGATCACTCCGCCGCTTCACTCGCCACACGAC 2951 Query 181 GCTCCCCTACCCAACCACACAGGT----------------------------TGCCACAG 212 |||| |||||||| ||| || | | ||||||| Sbjct 2950 GCTCTCCTACCCATCCATACGGCTGAACCACGAAGGCTTGCCTCAGTACGAATGCCACAA 2891 Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGC 272 |||||| || ||| ||||||| |||||| |||||||||||||||||||||||||||| Sbjct 2890 CTTCGGTGGCGTGCTTGAGCCCCGTTACATTGTCGGCGCGGAATCACTTGACCAGTGAGC 2831 Query 273 TATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAAC 332 |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| Sbjct 2830 TATTACGCACTCTTTCAAGGGTGGCTGCTTCTAAGCCAACCTCCTGGTTGTCACAGCAAC 2771 Query 333 TCCACATCCTTTCCCACTGAGTCAC-CACTTAGGGGCCTTAGCTGATGATCTGGGCTGTT 391 |||||||||||| ||||| || ||| | ||| ||| |||||| || ||||||||| |||| Sbjct 2770 TCCACATCCTTTTCCACTTAG-CACGCGCTTTGGGACCTTAGTTGGTGATCTGGGTTGTT 2712 Query 392 TCCCTCTCG 400 ||||||||| Sbjct 2711 TCCCTCTCG 2703 >seq18331 Length=287 Score = 77.0 bits (84), Expect = 8e-12 Identities = 75/97 (77%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| ||||||| |||| | || ||| | | | | Sbjct 119 CGACTACGCCTTTCGGCCTCGCCTTAGGTCCCGACTTACCCTGAGCGGACGAGCCTTCCT 60 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCAC 97 | ||||||||| | |||||||| ||||| ||| Sbjct 59 CAGGAACCCTTAGGCTTTCGGCGGATCAGATTCTCAC 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177204809216