Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq14733 372 5e-101 seq16818 228 1e-57 >seq14733 Length=4620 Score = 372 bits (412), Expect = 5e-101 Identities = 244/269 (91%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 7 GGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATG 66 ||||||| |||||||||| |||||| |||||||||||| || ||||| |||||| || Sbjct 4618 GGGCTTCACGCTTAGATGCTTTCAGCGCTTATCCCTTCCGTACATAGCTACCCAGCGGTG 4559 Query 67 CACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGG 126 | | |||| | ||||||||| |||||| ||| ||||||||||||||||||||||||||| Sbjct 4558 CTCCTGGCGGAACAACTGGTACACCAGCGGTACGTCCATCCCGGTCCTCTCGTACTAAGG 4499 Query 127 ACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGT 186 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 4498 ACAGCTCCTCTCAAATTTCCTACGCCCACGACAGATAGGGACCGAACTGTCTCACGACGT 4439 Query 187 TCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTT 246 |||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||| Sbjct 4438 TCTGAACCCAGCTCGCGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGGACCAACTC 4379 Query 247 CAGCCCCAGGATGAGACGAGCCGACATCG 275 ||||||||||||| ||||||||||||||| Sbjct 4378 CAGCCCCAGGATGCGACGAGCCGACATCG 4350 >seq16818 Length=6072 Score = 228 bits (252), Expect = 1e-57 Identities = 173/204 (85%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1 CGAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCA 60 ||||| |||||| |||||||||| |||||| |||||| | || ||| |||| ||| Sbjct 205 CGAGGCCGGCTTCCCGCTTAGATGCTTTCAGCGGTTATCCATCCCGAACGTAGCCAACCA 146 Query 61 GCTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 || |||| |||||||| |||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 145 GCCATGCCCTTGGCAGAACAACTGGCACACCAGAGGTTCGTCCAACCCGGTCCTCTCGTA 86 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| || ||| ||||||||||||||| |||| | | |||||||||||||||||||||| Sbjct 85 CTAGGGTCAGATCCTCTCAAATTTCCAACGCGCGCAGCGGATAGGGACCGAACTGTCTCA 26 Query 181 CGACGTTCTGAACCCAGCTCGCGT 204 ||||||||| |||||||||||||| Sbjct 25 CGACGTTCTAAACCCAGCTCGCGT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780546159724