Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq18366 107 3e-21 >seq18366 Length=1759 Score = 107 bits (118), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 9/200 (5%) Strand=Plus/Minus Query 89 GAGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGTT 148 |||| | || | ||||||||| | | || | || || |||||| ||||||||| | Sbjct 1048 GAGCGCAGCGATGAAGGCTTCCTGG-GGCACCTCGACCCGGCCCACCATCTTCATGCGCT 990 Query 149 TTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGC 208 | || || |||| |||||||| ||||| |||||||| ||||| | ||| || ||||||| Sbjct 989 TCTTGCCCTCCTTCTGCTTCTCGAGCAGTTTGCGCTTGCGGCTGATGTCGCCACCGTAGC 930 Query 209 ATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGA-GGTC---CGCGCAATGATCTGC 264 | ||||| || |||| ||||| || || |||| |||| || || |||| || Sbjct 929 ACTTGGCGAGCACGTCCTTTCGGATCGCG----CGGATGGTCTCGCGGGCGATGACGCGC 874 Query 265 CCGCCAATGGCGGCCTGGAT 284 |||| || ||||||||||| Sbjct 873 GCGCCGATCGCGGCCTGGAT 854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838118641344