Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq20001 181 3e-43 seq14733 118 3e-24 >seq20001 Length=1809 Score = 181 bits (200), Expect = 3e-43 Identities = 253/350 (72%), Gaps = 15/350 (4%) Strand=Plus/Minus Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| || Sbjct 1809 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGG 1750 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 ||| |||||||| || |||| ||||||||| |||| ||||||||| | ||||| ||| Sbjct 1749 TCACCCTCTCAGGCCGGCTACCCGTCGTCGCCTTGGTGAGCCATTACCTCACCAACAAGC 1690 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCC---CGAAGGTCCCCCTCTTTGGTCT 247 | || | || ||||| | || | | | | | | | | ||| Sbjct 1689 TGATAGGCCGCGAGTCCATCCCGAACCGATAAATCTTTCCACCCACACACCATGCGGTGA 1630 Query 248 TGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA-GT 306 || ||| ||| | ||||||| | |||||||||| | ||||||| |||| || Sbjct 1629 TGGGAC-ATATCCAGTATTAGACGCCGTTTCCAGCGCTTATCCCAGAGTTCGGGGCAGGT 1571 Query 307 TTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCT--GCTTCCTG 364 | | || |||||||||||| |||||||| | | | ||||||||| ||||| Sbjct 1570 TACTCACGTGTTACTCACCCGTTCGCCACTCTT---CCACCCAGCAAGCTGGGCTTC--- 1517 Query 365 TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||||||||| || ||||||||||||| ||||| Sbjct 1516 --ATCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCGTCCTGAG 1469 >seq14733 Length=4620 Score = 118 bits (130), Expect = 3e-24 Identities = 76/83 (92%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||||||||| || || |||||||| | ||||||||||||||||||||||| Sbjct 83 TTTACAACCCGAAGGCCGTCATCCCTCACGCGGCGTTGCTGCATCAGGCTTGCGCCCATT 24 Query 65 GTGCAATATTCCCCACTGCTGCC 87 ||||||||||||||||||||||| Sbjct 23 GTGCAATATTCCCCACTGCTGCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221989774784