Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq14733 343 4e-92 >seq14733 Length=4620 Score = 343 bits (380), Expect = 4e-92 Identities = 315/397 (79%), Gaps = 1/397 (0%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| |||||||||||||||||||||||||||||||||||||||| || |||||| |||| Sbjct 129 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTGTCCG 188 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||||| ||||||||||| | |||||| || || | ||| | |||||| | || Sbjct 189 GAATTATTGGGCGTAAAGAGCTCGTAGGCGGCTTGTCGCGTCTGCTGTGAAAACCCGAGG 248 Query 133 CTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAAT 192 ||||||| |||| |||| | | || | |||||||||| | ||||| | |||||| Sbjct 249 CTCAACCTCGGGCCTGCAGTGGGTACGGGCAAGCTAGAGTGCGGTAGGGGAGATTGGAAT 308 Query 193 TCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTT 252 |||| ||||||||||| |||||| |||||| |||||||||||| |||||||||| | | Sbjct 309 TCCTGGTGTAGCGGTGGAATGCGCAGATATCAGGAGGAACACCGATGGCGAAGGCAGATC 368 Query 253 GCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCC 312 |||| | ||||||||| |||||| ||||||| |||||||| ||||||||||||||||| Sbjct 369 TCTGGGCCGTAACTGACGCTGAGGAGCGAAAGCATGGGGAGCGAACAGGATTAGATACCC 428 Query 313 TGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGC-GCATAAGTGCTCCGGTG 371 |||||||||| |||||||||| || ||||| ||| ||| | | | | | | ||| Sbjct 429 TGGTAGTCCATGCCGTAAACGTTGGGAACTAGATGTAGGGACTGTTCCACGGTTTCTGTG 488 Query 372 CCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || ||| |||||| ||||| || ||||||||||| Sbjct 489 TCGTAGCTAACGCATTAAGTTCCCCGCCTGGGGAGTA 525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202796218112