Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq14733 246 1e-62 >seq14733 Length=4620 Score = 246 bits (272), Expect = 1e-62 Identities = 351/484 (73%), Gaps = 10/484 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| |||||| ||||||| | |||||||||| | |||||||||| ||| Sbjct 2366 CGAGTCTGAATAGGGCGGTTCAGTCGCATGTCCTAGACCCGAAGCGAAGTGATCTATCCA 2425 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||| |||||| ||| | |||||| ||||||||||| | |||||||| Sbjct 2426 TGGCCAGGTTGAAGCGACGGTAAGACGTCGTGGAGGACCGAACCCACTTAGGTTGAAAAC 2485 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | |||||||||||||||| |||||||||||||| || ||||||| | |||||||||||| Sbjct 2486 TGAGGGGATGAGCTGTGGATAGGGGTGAAAGGCCAATCAAACTTCGTGATAGCTGGTTCT 2545 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCAC-CATCGGGGGTAGAGC-ACTGTTA 237 |||||||| |||||||| || | || | | ||| |||||||| |||| | Sbjct 2546 CTCCGAAATGCATTTAGGTGCAGCGTTGCGTGTTTCTTGCCGGAGGTAGAGCTACTG-GA 2604 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC-AAACTCCGAATGCGCATCAGTTT 296 |||| | || | | | | | | || || ||||||||||||| | ||| Sbjct 2605 TGGC-CGATGGGCCCTACAAGGTTACTGACGTCAGCTAAACTCCGAATGCCGGTAAGTGA 2663 Query 297 TACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGAC 356 | ||| | |||||| |||| | |||| | | | ||||||| || || || || Sbjct 2664 GAGCGCAGCAGTGAGACTGTGGGGGATAAGCTTCATAGTCGAGAGGGAAACAACCCAGAT 2723 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 | || |||||| ||| || | ||||||| || || || || ||||| ||| Sbjct 2724 CACCAACTAAGGTCCCAAAGCGCGTGCTAAGTGGAA--AAGGATGTGGAGTTGCTGTGAC 2781 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 | | |||| |||||||| |||||||||| | || ||||||||||||| |||||||| || Sbjct 2782 AACCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGCTCACTGGT 2840 Query 477 CGAG 480 | || Sbjct 2841 CAAG 2844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689032987136