Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq14733 140 6e-31 >seq14733 Length=4620 Score = 140 bits (154), Expect = 6e-31 Identities = 192/265 (72%), Gaps = 14/265 (5%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||||||||| | || ||| ||||||||| ||| ||||||| Sbjct 1657 AGAGCAAACGGTGGATGCCTTGGCATCTGGAGCCGAAGAAGGACGTCGTAATCTGCGATA 1716 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC--- 117 ||| |||||||| |||| || ||||||| ||||||||||||||||||||| Sbjct 1717 AGCCTCGGGGAGTTGATAAACGAGCTATGATCCGAGGATTTCCGAATGGGGAAACCCCGC 1776 Query 118 ---GGCCCTT---TG---GGTCATTGCATGCTGAATACATA-GGTATGCAAAGCGAACGC 167 ||| | | || ||| | | | ||||||| ||| || | | || ||||| Sbjct 1777 CAGGGCGCGTGCGTGCCTGGTGACTCCCGCCTGAATATATAGGGCGGGTAGAGGGAACGT 1836 Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAAC-CGAGATTCCCAAAGTA 226 || ||| |||||||||| |||| | |||||| ||||| |||| | |||||| |||| Sbjct 1837 GGGGAAGTGAAACATCTCAGTACCCACAGGAAGAGAAAACAACATGTGATTCCGGGAGTA 1896 Query 227 GTGGCGAGCGAAATGGGATGAGCCT 251 ||||||||||||| ||| ||| || Sbjct 1897 GTGGCGAGCGAAACCGGAAGAGGCT 1921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918091794144