Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq14733 690 0.0 >seq14733 Length=4620 Score = 690 bits (764), Expect = 0.0 Identities = 493/563 (88%), Gaps = 9/563 (2%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| ||| |||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 4215 TCGACCTGTCAGTCTCACAGTCAAGCTCCCTTGTGCACTTACACTCGCCACCTGATTGCC 4156 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 4155 AACCAGGTTGAGGGAACCTTTGGGCGCCTCCGTTACTTTTTGGGAGG-CAACCGCCCCAG 4097 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 |||||||||||||||||||||||||| | || ||||| || || |||||||||||| Sbjct 4096 TTAAACTACCCACCAGGCACTGTCCCAAGACCCGATCAGGGTCCGTAGTTAGATATCCAG 4037 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 | | ||||||||||||||||||| |||||||| | |||| ||||| |||| ||| ||| Sbjct 4036 AATGACCAGAGTGGTATTTCAACAATGACTCCACGAACACTGGCGTGCCCGCTTCACAGT 3977 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 |||||||||||||||||||| | |||||||| ||||||||||||| |||| |||||| | Sbjct 3976 CTCCCACCTATCCTACACAAGTCACACCGAATACCAATACCAAGCTGTAGTAAAGGTCAC 3917 Query 301 GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGG 360 ||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||| ||| Sbjct 3916 GGGGTCTTTCCGTCCTGCTGCGCGTAACGAGCATCTTTACTCGTAATGCAATTTCGCCGA 3857 Query 361 GCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 420 | |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| Sbjct 3856 GTTCATGGTGGAGACAGCTGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCG 3797 Query 421 ACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 3796 ACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTAA 3737 Query 481 ATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGG 540 ||| || || || | | || || || ||||||||||||||||||||||| Sbjct 3736 ATTCAAAGCTTC-GAC-CGAAGT------CTAACCTCTCCTCTTAACCTTCCAGCACCGG 3685 Query 541 GCAGGCGTCAGTCCGTATACCTC 563 |||||||||||||||||||| || Sbjct 3684 GCAGGCGTCAGTCCGTATACGTC 3662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701828691584