Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq17077 138 3e-28 >seq17077 Length=1461 Score = 138 bits (152), Expect = 3e-28 Identities = 273/400 (68%), Gaps = 8/400 (2%) Strand=Plus/Plus Query 37871 GAGAATGGCGTGACGATTTGGGATGAGTGGGCGGACGAAAACGGCGATCTCGGCCCGATT 37930 || || |||||||| || ||||| |||||||| |||| | |||||| || ||||| | Sbjct 1057 GACAACGGCGTGACCATCTGGGACGAGTGGGCCGACGCGAGCGGCGACCTGGGCCCCGTC 1116 Query 37931 TACGGCGCGCAATGGCGCTCGTGGAAGGGAGCAGACGGGAAAAC-CATCGACCAGATCGC 37989 ||||||| ||| |||||||| ||| | || | |||| | | ||||||||||||| | Sbjct 1117 TACGGCGTGCAGTGGCGCTCCTGGCCGAC-GCCGGCGGGCGAGCACATCGACCAGATCTC 1175 Query 37990 ATGGGTTGTCGAAGAGATCAAACGAAATCCGCATTCACGCCGGCTGCTGGTGAGCGCTTG 38049 ||| |||| ||||| || ||| | || ||||| || | || ||| || Sbjct 1176 GCAGGTGATCGAGCAGATCCGTTCGAACCCGGACTCGCGCCGTCTCATCGTCTCCGCGTG 1235 Query 38050 GAATGTAGCAGAATTGGACGAGATGAAGCTGCCGCCGTGTCATTACGC---CTTTCAGTT 38106 ||| || || || | ||| ||||| ||| | ||||| | |||| ||| ||||| Sbjct 1236 GAACGTGGCGGAGCTCGACCAGATGGCGCTCGCACCGTGCC---ACGCGTTCTTCCAGTT 1292 Query 38107 CTATGTCGCCAACGGCCGGTTGTCATGCATGTGGCAGCAGCGCTCCGTTGATACGTTTTT 38166 ||| || ||| ||||| | | || ||| | | |||||||| | || | ||| | Sbjct 1293 CTACGTGGCCGACGGCAAGCTCTCGTGCCAGCTCTACCAGCGCTCTGCCGACATGTTCCT 1352 Query 38167 AGGGTTGCCGTTTAACATCGCGAGCTACGCGCTGTTGACGCATATGGTAGCCCAACAATG 38226 ||| ||||||| || ||||| |||||||||| | |||| ||||| || || || Sbjct 1353 CGGGGTGCCGTTCAATATCGCCTCCTACGCGCTGCTTACGCTCATGGTCGCGCAGCAGAC 1412 Query 38227 CGACTTGGATGTCGGTGAACTCATTTTCACCGGCGGCGAC 38266 || | || ||| || || | | |||||||||||| Sbjct 1413 CGGGCTCGAGCCCGGCGAGTTCGTCTGGACCGGCGGCGAC 1452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130587938245350