Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq32583 147 2e-30 seq31956 129 5e-25 seq32786 100 2e-16 >seq32583 Length=15821 Score = 147 bits (162), Expect = 2e-30 Identities = 277/401 (69%), Gaps = 11/401 (3%) Strand=Plus/Minus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 ||| || ||||||||||| || ||||| | || || || |||||| |||| |||| Sbjct 7061 GAAGGCTGATTGGGCCTTGAAATGGATTTCTGATAAAAATGCATCATTTGCTGAAAGATT 7002 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | |||||||| | ||||| || |||| ||| || || |||||| |||| || || Sbjct 7001 AATTGCATTTGCTGCTGTCGAAGGAATATTCTTCTCCGGCTCATTTGCCTCAATTTTCTG 6942 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACC--TTCAGCAATGAGTTGATATCACGC 61611 |||||| || | ||| | ||||| || |||| |||| |||||| | || ||| | Sbjct 6941 GTTGAAAAAGAGAGGATTGATGCCAGGATTGACTCATTCA--AATGAGCTCATTTCAAGA 6884 Query 61612 GACGAGGGCATGCATTGTGATTTTGCT-GT-TTTGCTATTCAAACGCTATCTGGTGAATC 61669 ||||| || | || ||||||| ||| || ||| ||||| | ||| | ||| Sbjct 6883 GACGAAGGACTTCACCGTGATTTCGCTTGTCTTTTGTATTCGAT-GCTTCAAAATAAATT 6825 Query 61670 GTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAAT 61729 | | | || || | ||| ||| | || || || | |||||||| |||| Sbjct 6824 GAGCC----AAGAACGAATCTATGAAATTATCAAAGATGCCGTCTCAATCGAACAAGAAT 6769 Query 61730 TTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGT 61789 | ||||||| |||||||| || | || || ||||||||| |||| ||||| || | Sbjct 6768 TCTTGACTGAGGCTTTGCCTGTTGATATGATTGGTATGAATTGTCGACTTATGTCACAAT 6709 Query 61790 ATATTGAATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGT 61830 |||| ||||||||||| || | | ||||||| || |||||| Sbjct 6708 ATATCGAATTTGTTGCTGATCATTTGTTGGTTGAATTGGGT 6668 >seq31956 Length=51777 Score = 129 bits (142), Expect = 5e-25 Identities = 305/461 (66%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 || || || || || | ||||| |||| | || || || | ||| ||||| || ||| Sbjct 35120 TCAACAGTAAATTGAACAGCATTCACAGCTGGTTTTGTTCTCAAATAATACATTCCAGTC 35179 Query 65138 TTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCG 65197 || | || |||| ||||||||||||| |||| | |||||| | || | Sbjct 35180 TTCAATCCCTTCTTCCAACCATAGAAATGCATTGATGTGATCGCGGCATAACTTGGTTTA 35239 Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 |||| ||| |||||||| || ||||| ||| || || |||||||||||||| Sbjct 35240 GCCATATGAATATTCAAACTTTGTGATTGATCAATGAAAGCTCCGCGATCTGCAGCCATC 35299 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATT 65317 ||||| || | |||||| ||||| || || ||||||| | ||| || Sbjct 35300 TCAATAATCTCTTTTTGCGATATTTCCCAAACTGTTTTGTACAACTCTTTGATTTCAGTT 35359 Query 65318 GGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGAC 65377 ||||| | ||||| | || | || ||| | ||||| | ||||| ||| Sbjct 35360 GGAATTTGTTCAATATTTTGAATCGATCCATTGCTGGCAATCAATCGATTTTTCATATCA 35419 Query 65378 TCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAAC 65437 || ||| || || | || | | || | | ||| || |||||| | |||||| Sbjct 35420 TCATCCCATAATCCAAGTTCAACCAAATCCTTCAACAAATGTGGATTGACAATTTGGAAA 35479 Query 65438 TCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTG 65497 ||||| |||| ||||| || |||||| ||||| ||| ||||||| || ||| || Sbjct 35480 TCGCCAGACAAAACACGTCGAGAATAGATATTGGAAGTGTATGGTTCAATTGACTCATTG 35539 Query 65498 TTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGC 65538 || || || ||||| || || || ||||||||||| ||||| Sbjct 35540 TTTCCGAGGATTTGAGCTGTGGAAGCAGTTGGCATTGGAGC 35580 Score = 116 bits (128), Expect = 3e-21 Identities = 215/313 (69%), Gaps = 2/313 (1%) Strand=Plus/Plus Query 66253 TTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGA 66312 |||||| ||||||||| ||||| || | | |||| | | || ||||| ||||| Sbjct 36326 TTCGAACTCTTCACCCCAAACTTCATCGAGTCCTTGACATTCGCAAGGGCACATTAGCGA 36385 Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 |||||| | || ||| || || ||| || | ||| || | ||| || || ||| Sbjct 36386 CCAATCTTCGTCTCTTTCGACGCGTTTCATGAACAAATCTGGGACCCAAAGAGCCAGGAA 36445 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAA 66431 |||||||| |||| | || || ||| ||| |||||||| | ||| ||| || | Sbjct 36446 AAGATCGCGAGCTCTCTCTTCTTCTGGGCCAGTG-TTTTTGCGGAGAGCGACGAATTCGA 36504 Query 66432 AGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCAC 66491 | || ||||||||||||||||| || || || || || | || ||||||| |||| Sbjct 36505 AAATATCGGCATGCCATGGTTCGAGATAAATAGCAAAGGCACCTGGACGTTTGTTTCCAC 36564 Query 66492 CTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAG 66551 |||| ||||| || | || |||||| | || || | ||| || || || || || | Sbjct 36565 CTTGATCGACATATCTGGCTGTGTTGTTGTAAACGCGAAGCATTGGAACAAGACCATTTG 36624 Query 66552 ATTTGCCATTGGT 66564 || | || ||||| Sbjct 36625 ATGTTCCGTTGGT 36637 >seq32786 Length=16869 Score = 100 bits (110), Expect = 2e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 9146 TTTGGGCCCCATTTACGGTTTCCAGTGGCGACATTTCGGTGCTCGGTACATCGATTGTCA 9205 |||||| || |||||||||| || ||||||||||| || || || ||||||||||| Sbjct 7359 TTTGGGACCGGTTTACGGTTTTCAATGGCGACATTTTGGAGCGAAATATATCGATTGTCA 7418 Query 9206 TACGGACTATACGGGCCAAGGTGTGGATCAGTTGGCGCAATGTATGCATCAGATCCAATA 9265 ||| | ||| || |||||||| ||||| ||||| || ||| | || || | | | Sbjct 7419 TACAAATTATGAAGGACAAGGTGTTGATCAATTGGCTGAAGTTATTCGACAAATTCGAGA 7478 Query 9266 TGAGCCGAGTAGTCGACGCATGATTATGACTGCCTGGAATCCGAA 9310 || || ||||||| | || ||| || | || ||||||||||| Sbjct 7479 AGAACCCGATAGTCGAAGGATCATTTTGTCAGCTTGGAATCCGAA 7523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397405394563760