Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20angaria_20[genbank_20GCA_5F000165025.1_202010-10- 26] 33,559 sequences; 79,761,545 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq17334 354 2e-93 seq18931 82.4 2e-11 >seq17334 Length=1447 Score = 354 bits (392), Expect = 2e-93 Identities = 581/830 (70%), Gaps = 34/830 (4%) Strand=Plus/Minus Query 8821 GGCTCATCCCAATCGGGGGTGTAGGAGTTGGGGTCTGAAGCCGCCGGTCTCGAGCAGGCT 8880 ||||| || |||| || ||||| ||||| |||||| || |||| ||||||| | Sbjct 817 GGCTCTTCGGAATCAAGGATGTAG---TTGGGATCTGAACCCTCCGGCTTCGAGCAAGGA 761 Query 8881 TCGGGCGATGTAGTTGGTCAGGTTGCGGAACCCGAGTGCGGAGCCGCGCAGGTGTTCGAG 8940 || |||| |||||| ||||||||||| ||||| || |||||||| ||||| ||||| Sbjct 760 TCTCGCGACGTAGTTCAAGAGGTTGCGGAAGCCGAGCGCCGAGCCGCGGAGGTGCTCGAG 701 Query 8941 CCGTCCGTTGAGCGCCTCGGTCGGCCCGTTGCTGGTGCCGGGTCGTTCGAAGTAGGCGAG 9000 || ||||||| ||||||||| |||||||| ||||||||| | ||||| | ||||| Sbjct 700 CCTGCCGTTGATCGCCTCGGTGGGCCCGTTCGACGTGCCGGGTTGGCCGAAGAACGCGAG 641 Query 9001 CACGTCAGCGGCTCGCTTCTTCAGGGTCCGGCCCAGGGTGGTGAGCTCGGTGAGCACCTT 9060 ||| | ||||| |||| || | | | || || | ||| | || || | Sbjct 640 CACATATGCGGCGCGCTGTTTGAAAG-CTTGC---GGATCTTGACC------AGTACGGT 591 Query 9061 GGGGACGCCGGCGCTNNNNNNNNNNNNNA--GCTTCTCCATGAGCTCGCGGCCACGTTGC 9118 ||||||| |||||| | |||| ||| | || | ||| | | Sbjct 590 CGGGACGCTGGCGCTCACCGCGTCGATCACGGCTTG--CATCATCTGCCCGCCCTCTGTC 533 Query 9119 CGGTCCTCGTGGCGATAGGCGGCGATCATGCGCTGGTAGACACCCCAGGTCGCCTCGACC 9178 ||| | |||| |||||||||||||||||||||| |||||| ||||| |||||| Sbjct 532 TTGTCGGGTTCTCGATTTGCGGCGATCATGCGCTGGTAGATACCCCAAGTCGCTTCGACC 473 Query 9179 TCGACGTGAGCGTCATCAACGAACAGCGCGCGTAGCCTGTCGCTCTGCTTGTCGGTGAGC 9238 |||||||| | || | |||| || || |||| ||| || |||||||| | Sbjct 472 TCGACGTGCTCCTCGGCCGCGAATAGTGCCTCCAGCCGAATCCTCCGCCGGTCGGTGAAC 413 Query 9239 AGGTCCGCGCCGGTGTGCAGCGTGCGCCGCGACTTGTAGAGCGGGTCGTCCCTGAACCCA 9298 || | |||||||| | || ||||| ||| || ||| ||||||||| || | | || Sbjct 412 AGTTTGTCGCCGGTGCGGAGGGTGCG--GCGCCTGGTAAAGCGGGTCGCCCTTCATTCCG 355 Query 9299 CGGTGCCCGTGGATCGCGAGTTGGACCCGGCGCCGGCACCTGTCGAGGGCGTCACCGGCC 9358 || | ||| | | | | || | ||||||||||| ||||| || || |||| Sbjct 354 CGCCGACCGAGCAAGTCTTGCTGAAGGCGGCGCCGGCAGGCATCGAGCGCATCTCCGGTG 295 Query 9359 AGGCGCACGACGTGGAAGGGATCCATCACCGTGACCGCGTCCGGGATCTCCTCTGCAGCG 9418 || || | |||||||||||| |||| || | ||||||||| || | ||| | ||| Sbjct 294 AGCCGACCAACGTGGAAGGGACCCATGACGGGGACCGCGTCAGGTA---GTTCTTCGGCG 238 Query 9419 GCGGTCTTGAACCCGGTGAAGCCGTCCATCGCGACCACCTCGA--CC---GCGTCACGGA 9473 ||||||| |||||||||||| |||||||||||||| ||| ||| || || ||| Sbjct 237 GCGGTCTCGAACCCGGTGAACCCGTCCATCGCGACTACCCCGATTCCCTTGCTCCAC--- 181 Query 9474 AGGCGTCGTCGCGGTCGGCGAGCCAGGTCTTGAACGCCGCCTTCGACCGGCCCTCGACCA 9533 | |||||| || | |||||||| | | ||||| ||| || || ||||||||||||| Sbjct 180 -GCCGTCGT-GCTGGCGGCGAGCAACTGCATGAACACCG-CTCGGAACGGCCCTCGACCA 124 Query 9534 TGTCCAGCAGCCTTGCTGGGCCGGCGCCATCGCGGACCGGGG-TGAGGTCGATGATCACG 9592 | | ||||||| || ||||||| | | || | |||| | ||||||| ||||||| Sbjct 123 TACCGAGCAGCCGGGCCGGGCCGGTCCTGTTCCGCGCGGGGGATAAGGTCGACGATCACG 64 Query 9593 GTGACGTACTTGTCGCCACGCCTGGTGTGGCGCCAGACGTGCTCATCGAC 9642 ||| | ||||||||||| ||| ||||| |||||||| ||||| ||||| Sbjct 63 GTGGCCTACTTGTCGCCGAGCCGAGTGTGTCGCCAGACATGCTCGTCGAC 14 >seq18931 Length=1323 Score = 82.4 bits (90), Expect = 2e-11 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 36553 CGAATGGAAGGACGGCGAGGCCCTGTTCCTGCCCTGCT-CGGTGT-GGCGTCAGCCGGCC 36610 ||| ||| |||||||||||| |||||||| ||| || | | |||| || || Sbjct 793 CGACTGGTCGGACGGCGAGGCGCTGTTCCTCGGTTGCCGCGCTTTCGGCG--AGTACGCG 850 Query 36611 GAGAACGTGGCCGAATCGCTGGCCAAGGGCATGCGTGTGATCGTCCAGGGACGTCTCCGG 36670 || ||| | |||| ||||| ||||||||| ||| |||||||||||||| |||||| Sbjct 851 GACAACATCGCCGCGTCGCTCACCAAGGGCACGCGAGTGATCGTCCAGGGCCGTCTCACC 910 Query 36671 GCGCGCAGCTACGACGACCGCGACGGAAACCGTCGCACTGTGATCGGGATCGAAGTCGAT 36730 |||||||||| |||| | | || | | ||||| | ||| |||| ||||| Sbjct 911 CAGCGCAGCTACACCGACAACCAGGGGCAGCAGCGCACCTCGCTCGACCTCGAGGTCGAA 970 Query 36731 GACGTGGGCCC 36741 || || ||||| Sbjct 971 GAGGTCGGCCC 981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126675897866316