Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1827 179 7e-43 >seq1827 Length=14047 Score = 179 bits (198), Expect = 7e-43 Identities = 239/326 (73%), Gaps = 7/326 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | || ||||| ||| ||||| | | Sbjct 11503 AGGGGAGTGAAATAGAACCTGAAACCGTGTGCTTACAAAAAGTCAGAGCCCGTTTTAGGG 11444 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA-GCGAGGTTAAG 129 |||| ||||||||||||| | ||||| || ||||||| ||| || || |||||||| Sbjct 11443 GTGATGGCGTGCCTTTTGTAGAATGAACCGGCGAGTTA--CGTTCCCGTGCAAGGTTAAG 11386 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGC 188 | | || ||| ||||| || ||||||||| || || |||||||| ||| |||| Sbjct 11385 G--TGAAGAGCCGG-AGCCGCAGCGAAAGCGAGTCTGAATAGGGCGACTTAGTACGTGGA 11329 Query 189 GCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGAT 248 ||||| ||||||| ||||||||||| | |||| ||||| |||||||| || | Sbjct 11328 CGTAGACCCGAAACCGGGTGATCTACCCCTGTCCAGGGTGAAGGTGCGGTAACACGCACT 11269 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 ||||| ||||||| |||||||||||| |||||| | |||||| || |||| Sbjct 11268 GGAGGCCCGAACCCACGCACGTTGAAAAGTGCGGGGATGAGGTGGGGGTAGCGGAGAAAT 11209 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 |||||| |||| ||| |||||| || Sbjct 11208 TCCAATCGAACTCGGAGATAGCTGGT 11183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972767848960