Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq369 147 4e-33 seq82 118 2e-24 >seq369 Length=46607 Score = 147 bits (162), Expect = 4e-33 Identities = 194/257 (75%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACAT 124 ||||| | ||||| ||||| |||| |||||| ||||| ||||| |||||| | ||| | Sbjct 38460 GCCAGCAGGTTTACCTTGAATAAATCAGAGTGCTCAAAACAGGCTTTTGCTTGTATAGCT 38519 Query 125 TAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGT 184 | ||||||||||| |||||||| | ||||||| ||||||||| |||||| || | | Sbjct 38520 CATCATGGAATAATGAAATAGGAC-TTCGGTTCT-TTTTGTTGG-TTCTAGAACTGATTT 38576 Query 185 AATGATTAATAGGGA-TAGTCGGGGGTGTCAGTATTCAAT-TGTCAGAGGTGAAATTCTT 242 |||| |||| ||||| | |||||| | ||| ||| | | ||||||||||||| | Sbjct 38577 AATGGTTAAGAGGGACAAACCGGGGGCATTCGTA-TCATTACGCGAGAGGTGAAATTCGT 38635 Query 243 GGA-TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAG 301 ||| || || |||| | | |||||||| || ||||| |||| ||||||||||| Sbjct 38636 GGACCGTAGTG-AGACGCCCAATAGCGAAAGCATTTGCCAAGAATGTCTTCATTAATCA- 38693 Query 302 TGAACGAAAGTTAGGGG 318 |||||||||| || || Sbjct 38694 AGAACGAAAGTCAGAGG 38710 >seq82 Length=386371 Score = 118 bits (130), Expect = 2e-24 Identities = 182/249 (73%), Gaps = 13/249 (5%) Strand=Plus/Plus Query 73 TTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGG 132 |||||| ||||| |||| |||||| ||||| ||||| |||||| | ||| | | ||||| Sbjct 268352 TTTTACCTTGAATAAATCAGAGTGCTCAAAACAGGCTTTTGCTTGTATAGCTCATCATGG 268411 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 || ||| |||||||| | ||||||| ||||||||||| |||| || | ||||| ||| Sbjct 268412 AACAATGAAATAGGACTT-CGGTTCT-TTTTGTTGGTT-CTAGAACTGATTTAATGGTTA 268468 Query 193 ATAGGGATAGTC-GGGGGTGTCAGTATTCAATTGTC-AGAGGTGAAATTC-TTGGATTTA 249 | | || | | ||||| | |||| || | | ||||||||||||| | || || Sbjct 268469 AGAAAGACAAACCGGGGGCATTCGTAT-CATTACGCGAGAGGTGAAATTCGTGGGCCGTA 268527 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 || |||| | | |||||||| || |||||| |||| |||||| | ||||||| Sbjct 268528 GTG-AGACGCCCAATAGCGAAAGCATTTACCAAGAATGTCTTCATT-----GAGAACGAA 268581 Query 310 AGTTAGGGG 318 ||| || || Sbjct 268582 AGTCAGAGG 268590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915169752640