Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq382 147 9e-33 seq369 147 9e-33 seq2677 98.7 4e-18 >seq382 Length=61203 Score = 147 bits (162), Expect = 9e-33 Identities = 101/114 (89%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 59175 GACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGAA 59116 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || | |||||||| ||||||||||||||| | | |||||||||||||||| Sbjct 59115 GTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGGCGA 59062 >seq369 Length=46607 Score = 147 bits (162), Expect = 9e-33 Identities = 101/114 (89%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 8051 GACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGAA 8110 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || | |||||||| ||||||||||||||| | | |||||||||||||||| Sbjct 8111 GTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGGCGA 8164 Score = 147 bits (162), Expect = 9e-33 Identities = 101/114 (89%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 570 GACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAG 629 |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 41445 GACCCGAAAGATGGTGAACTATGCCTGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGAA 41504 Query 630 GCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || | |||||||| ||||||||||||||| | | |||||||||||||||| Sbjct 41505 GTCCGTATCGGTTCTGACGTGCAAATCGATCGATAGACTTGGGTATAGGGGCGA 41558 >seq2677 Length=5553 Score = 98.7 bits (108), Expect = 4e-18 Identities = 91/113 (81%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 |||||||||||||||||||||||| || || |||||| ||||||||||||||||| Sbjct 907 ACCCGAAAGATGGTGAACTATGCCCGAGCTGGATGAAGCGGGAGGAAACTCTGGTGGAAT 966 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || | | |||||| ||||| ||| |||| ||| ||||||| |||||||| Sbjct 967 GCCGTATCCGTTCTGACGTGC-CATCAATCGATAAACTTGGGTA-AGGGGCGA 1017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079929107750