Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1827 385 1e-104 >seq1827 Length=14047 Score = 385 bits (426), Expect = 1e-104 Identities = 332/409 (81%), Gaps = 3/409 (1%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||||||| | |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct 13437 TACCTGAGAAGAAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 13378 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 ||||||| |||||||| ||||||||||||| ||||||||||| | |||| | ||||| Sbjct 13377 AAGCGTTGTCCGGAATTATTGGGCGTAAAGCGCGCGCAGGCGGTCATTTAAGTCTGGTGT 13318 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||||| ||||| |||| ||| | ||| | | |||| |||| ||||| ||| Sbjct 13317 TTAATCCCGGGGCTCAACCCCGGA-TCGCACTGGAAACTGGGTGACTTGAGTGCAGAAGA 13259 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 13258 GGAGAGTGGAATTCCACGTGTAGCGGTGAAATGCGTAGATATGTGGAGGAACACCAGTGG 13199 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||| | | ||||| | ||||||||| | || |||||||||||||||||||||| Sbjct 13198 CGAAGGCGACTCTCTGGGCTGTAACTGACGCTGAGGCGCGAAAGCGTGGGGAGCAAACAG 13139 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTT--A 360 |||||||||||||||||||||||||| |||||||| |||| |||| ||| ||| | Sbjct 13138 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAGGTGTTAGGGGTTTCGA 13079 Query 361 CTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||||||| || || |||| | | ||| ||||||||||| ||| Sbjct 13078 TACCCTTGGTGCCGAAGTTAACACATTAAGCACTCCGCCTGGGGAGTAC 13030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289557378720