Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20brenneri_20[genbank_20GCA_5F000143925.2_202010-11- 15] 3,305 sequences; 190,369,721 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1827 212 9e-53 >seq1827 Length=14047 Score = 212 bits (234), Expect = 9e-53 Identities = 197/248 (79%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| |||||||| ||| ||||| | |||||||| Sbjct 10155 CTTAACCTTCCAGCACCGGGCAGGCGTCAGCCCGTATACTTCGCCTTACGG-CTTCGCAC 10213 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| ||||||||||||| || ||| ||||| || || | ||| Sbjct 10214 AGACCTGTGTTTTTGCTAAACAGTCGCTTGGGCCTTTTCACTGCGGCCCCCTCGTGCTAT 10273 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 ||| || | | | ||||||||||||||||||||||||||| ||||||||||| Sbjct 10274 TCAC-------ACTACCGG-GGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAG 10325 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||||| | ||||| ||| |||||||| || |||| | | | |||||||||||| Sbjct 10326 TTCCTTAACGAGAGTTCTTCCGCGCGCCTTAGAATACTCTTCTCGCCTACCTGTGTCGGT 10385 Query 241 TTACGGTA 248 || ||||| Sbjct 10386 TTGCGGTA 10393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694377767265